Hb_012325_020

Information

Type -
Description -
Location Contig12325: 22247-46266
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02030g
description POPTRDRAFT_562244; cell division cycle protein 48
nr
ID XP_012066162.1
description PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
swissprot
ID F4IAE9
description ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana GN=At1g05910 PE=2 SV=1
trembl
ID A0A067L2X1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23743 PE=3 SV=1
Gene Ontology
ID GO:0005515
description atpase family aaa domain-containing protein at1g05910

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07088: 22394-31351 , PASA_asmbl_07089: 35504-46211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012325_020 0.0 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
2 Hb_001318_270 0.0521235563 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
3 Hb_001454_190 0.0668963114 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
4 Hb_000445_040 0.069738438 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
5 Hb_003976_030 0.0777023449 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
6 Hb_001726_020 0.0777230875 - - PREDICTED: endophilin-A1 [Jatropha curcas]
7 Hb_001959_190 0.0829122678 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
8 Hb_016901_010 0.085750417 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
9 Hb_002110_150 0.0882718023 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
10 Hb_020805_130 0.0918515311 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_000092_010 0.0926482411 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
12 Hb_008725_260 0.0939288874 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
13 Hb_000086_400 0.0946621785 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_050622_050 0.0948093531 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
15 Hb_005188_020 0.0949844984 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
16 Hb_000049_310 0.0950029198 - - Myosin-J heavy chain, partial [Glycine soja]
17 Hb_085863_030 0.0952417778 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
18 Hb_003371_090 0.0953650011 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
19 Hb_002830_030 0.0969977991 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
20 Hb_004607_030 0.0974542086 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_012325_020 Hb_012325_020 Hb_001318_270 Hb_001318_270 Hb_012325_020--Hb_001318_270 Hb_001454_190 Hb_001454_190 Hb_012325_020--Hb_001454_190 Hb_000445_040 Hb_000445_040 Hb_012325_020--Hb_000445_040 Hb_003976_030 Hb_003976_030 Hb_012325_020--Hb_003976_030 Hb_001726_020 Hb_001726_020 Hb_012325_020--Hb_001726_020 Hb_001959_190 Hb_001959_190 Hb_012325_020--Hb_001959_190 Hb_002110_150 Hb_002110_150 Hb_001318_270--Hb_002110_150 Hb_001318_270--Hb_001726_020 Hb_000041_100 Hb_000041_100 Hb_001318_270--Hb_000041_100 Hb_050622_050 Hb_050622_050 Hb_001318_270--Hb_050622_050 Hb_000783_020 Hb_000783_020 Hb_001318_270--Hb_000783_020 Hb_172932_010 Hb_172932_010 Hb_001454_190--Hb_172932_010 Hb_016901_010 Hb_016901_010 Hb_001454_190--Hb_016901_010 Hb_000617_150 Hb_000617_150 Hb_001454_190--Hb_000617_150 Hb_000002_050 Hb_000002_050 Hb_001454_190--Hb_000002_050 Hb_011534_030 Hb_011534_030 Hb_001454_190--Hb_011534_030 Hb_001507_040 Hb_001507_040 Hb_000445_040--Hb_001507_040 Hb_000165_160 Hb_000165_160 Hb_000445_040--Hb_000165_160 Hb_020805_130 Hb_020805_130 Hb_000445_040--Hb_020805_130 Hb_000445_040--Hb_001318_270 Hb_002830_030 Hb_002830_030 Hb_000445_040--Hb_002830_030 Hb_000092_010 Hb_000092_010 Hb_003976_030--Hb_000092_010 Hb_000280_080 Hb_000280_080 Hb_003976_030--Hb_000280_080 Hb_000011_330 Hb_000011_330 Hb_003976_030--Hb_000011_330 Hb_005348_140 Hb_005348_140 Hb_003976_030--Hb_005348_140 Hb_001892_020 Hb_001892_020 Hb_003976_030--Hb_001892_020 Hb_005539_280 Hb_005539_280 Hb_001726_020--Hb_005539_280 Hb_000250_060 Hb_000250_060 Hb_001726_020--Hb_000250_060 Hb_000504_140 Hb_000504_140 Hb_001726_020--Hb_000504_140 Hb_005779_060 Hb_005779_060 Hb_001726_020--Hb_005779_060 Hb_001726_020--Hb_000783_020 Hb_000529_170 Hb_000529_170 Hb_001726_020--Hb_000529_170 Hb_001959_190--Hb_020805_130 Hb_004607_030 Hb_004607_030 Hb_001959_190--Hb_004607_030 Hb_001014_030 Hb_001014_030 Hb_001959_190--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_001959_190--Hb_003371_090 Hb_009803_050 Hb_009803_050 Hb_001959_190--Hb_009803_050 Hb_001959_190--Hb_001507_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6834 14.3714 9.67513 8.23308 13.697 15.5242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2497 19.7237 38.3391 15.6362 12.9978

CAGE analysis