Hb_000445_040

Information

Type -
Description -
Location Contig445: 51247-53918
Sequence    

Annotation

kegg
ID rcu:RCOM_0562160
description poly(p)/ATP NAD kinase, putative (EC:2.7.1.23)
nr
ID XP_012078316.1
description PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q9C5W3
description NAD kinase 2, chloroplastic OS=Arabidopsis thaliana GN=NADK2 PE=1 SV=1
trembl
ID E6NU77
description JMS09K11.5 protein OS=Jatropha curcas GN=JMS09K11.5 PE=3 SV=1
Gene Ontology
ID GO:0003951
description poly atp nad

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42856: 36992-51750 , PASA_asmbl_42858: 52013-52110 , PASA_asmbl_42859: 52134-52256 , PASA_asmbl_42860: 53206-54050 , PASA_asmbl_42861: 53490-54023 , PASA_asmbl_42862: 54678-55733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_040 0.0 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
2 Hb_012325_020 0.069738438 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
3 Hb_001507_040 0.0769801862 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000165_160 0.0801659256 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
5 Hb_020805_130 0.0816204655 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_001318_270 0.0829206625 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
7 Hb_002830_030 0.0834112214 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
8 Hb_010422_060 0.0898801093 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
9 Hb_008616_070 0.089898992 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
10 Hb_003976_030 0.0941924719 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
11 Hb_001959_190 0.0943343434 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
12 Hb_001726_020 0.0945863893 - - PREDICTED: endophilin-A1 [Jatropha curcas]
13 Hb_001811_030 0.0947237093 - - Beta-ureidopropionase, putative [Ricinus communis]
14 Hb_001014_040 0.1002187984 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
15 Hb_000120_960 0.1021531688 - - isocitrate dehydrogenase, putative [Ricinus communis]
16 Hb_000783_020 0.1029864719 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
17 Hb_000617_150 0.1034524156 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
18 Hb_003291_010 0.104097537 - - ATP-dependent protease La, putative [Ricinus communis]
19 Hb_002660_070 0.1041397214 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
20 Hb_001454_190 0.10617833 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]

Gene co-expression network

sample Hb_000445_040 Hb_000445_040 Hb_012325_020 Hb_012325_020 Hb_000445_040--Hb_012325_020 Hb_001507_040 Hb_001507_040 Hb_000445_040--Hb_001507_040 Hb_000165_160 Hb_000165_160 Hb_000445_040--Hb_000165_160 Hb_020805_130 Hb_020805_130 Hb_000445_040--Hb_020805_130 Hb_001318_270 Hb_001318_270 Hb_000445_040--Hb_001318_270 Hb_002830_030 Hb_002830_030 Hb_000445_040--Hb_002830_030 Hb_012325_020--Hb_001318_270 Hb_001454_190 Hb_001454_190 Hb_012325_020--Hb_001454_190 Hb_003976_030 Hb_003976_030 Hb_012325_020--Hb_003976_030 Hb_001726_020 Hb_001726_020 Hb_012325_020--Hb_001726_020 Hb_001959_190 Hb_001959_190 Hb_012325_020--Hb_001959_190 Hb_001507_040--Hb_020805_130 Hb_008616_070 Hb_008616_070 Hb_001507_040--Hb_008616_070 Hb_002660_070 Hb_002660_070 Hb_001507_040--Hb_002660_070 Hb_001507_040--Hb_000165_160 Hb_006615_020 Hb_006615_020 Hb_001507_040--Hb_006615_020 Hb_002799_070 Hb_002799_070 Hb_000165_160--Hb_002799_070 Hb_005183_120 Hb_005183_120 Hb_000165_160--Hb_005183_120 Hb_000783_020 Hb_000783_020 Hb_000165_160--Hb_000783_020 Hb_000334_150 Hb_000334_150 Hb_000165_160--Hb_000334_150 Hb_020805_130--Hb_001959_190 Hb_009803_050 Hb_009803_050 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_000603_080 Hb_000603_080 Hb_020805_130--Hb_000603_080 Hb_002027_040 Hb_002027_040 Hb_020805_130--Hb_002027_040 Hb_002110_150 Hb_002110_150 Hb_001318_270--Hb_002110_150 Hb_001318_270--Hb_001726_020 Hb_000041_100 Hb_000041_100 Hb_001318_270--Hb_000041_100 Hb_050622_050 Hb_050622_050 Hb_001318_270--Hb_050622_050 Hb_001318_270--Hb_000783_020 Hb_010422_060 Hb_010422_060 Hb_002830_030--Hb_010422_060 Hb_005779_060 Hb_005779_060 Hb_002830_030--Hb_005779_060 Hb_001009_270 Hb_001009_270 Hb_002830_030--Hb_001009_270 Hb_002830_030--Hb_002110_150 Hb_000876_070 Hb_000876_070 Hb_002830_030--Hb_000876_070 Hb_000504_140 Hb_000504_140 Hb_002830_030--Hb_000504_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.177 5.96725 6.29005 5.26684 7.58914 5.87151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.2145 9.20746 19.6052 7.1544 6.15173

CAGE analysis