Hb_000603_080

Information

Type -
Description -
Location Contig603: 69166-84840
Sequence    

Annotation

kegg
ID vvi:100267901
description pentatricopeptide repeat-containing protein At4g33170
nr
ID XP_010648799.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
swissprot
ID Q9SMZ2
description Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
trembl
ID B9RQZ0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0707840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50641: 74111-74228 , PASA_asmbl_50642: 75535-75678 , PASA_asmbl_50645: 77427-77605 , PASA_asmbl_50646: 77999-78153 , PASA_asmbl_50647: 79286-84757 , PASA_asmbl_50648: 79286-84744 , PASA_asmbl_50650: 80282-80558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
2 Hb_009803_050 0.0556557319 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
3 Hb_001314_070 0.0603234825 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005488_200 0.0651067523 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
5 Hb_001504_330 0.0724417913 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
6 Hb_000982_080 0.075967798 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
7 Hb_003994_260 0.0761469435 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
8 Hb_000327_180 0.0771037614 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
9 Hb_020805_130 0.077767139 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_031910_020 0.0781695375 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
11 Hb_003847_030 0.0791901792 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
12 Hb_003376_250 0.0801050765 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
13 Hb_007416_060 0.082996188 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
14 Hb_000049_210 0.0832650528 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
15 Hb_000614_250 0.083274611 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
16 Hb_010812_120 0.0843515679 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
17 Hb_001507_040 0.084405144 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001195_200 0.085933206 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
19 Hb_001633_210 0.0867057278 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
20 Hb_002799_070 0.089429072 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]

Gene co-expression network

sample Hb_000603_080 Hb_000603_080 Hb_009803_050 Hb_009803_050 Hb_000603_080--Hb_009803_050 Hb_001314_070 Hb_001314_070 Hb_000603_080--Hb_001314_070 Hb_005488_200 Hb_005488_200 Hb_000603_080--Hb_005488_200 Hb_001504_330 Hb_001504_330 Hb_000603_080--Hb_001504_330 Hb_000982_080 Hb_000982_080 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260 Hb_020805_130 Hb_020805_130 Hb_009803_050--Hb_020805_130 Hb_001959_190 Hb_001959_190 Hb_009803_050--Hb_001959_190 Hb_002878_020 Hb_002878_020 Hb_009803_050--Hb_002878_020 Hb_005162_060 Hb_005162_060 Hb_009803_050--Hb_005162_060 Hb_009803_050--Hb_005488_200 Hb_000393_020 Hb_000393_020 Hb_001314_070--Hb_000393_020 Hb_000250_060 Hb_000250_060 Hb_001314_070--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001314_070--Hb_010812_120 Hb_000483_260 Hb_000483_260 Hb_001314_070--Hb_000483_260 Hb_004117_260 Hb_004117_260 Hb_001314_070--Hb_004117_260 Hb_005488_200--Hb_000982_080 Hb_007416_060 Hb_007416_060 Hb_005488_200--Hb_007416_060 Hb_003376_250 Hb_003376_250 Hb_005488_200--Hb_003376_250 Hb_148113_010 Hb_148113_010 Hb_005488_200--Hb_148113_010 Hb_003697_040 Hb_003697_040 Hb_005488_200--Hb_003697_040 Hb_002799_040 Hb_002799_040 Hb_001504_330--Hb_002799_040 Hb_000007_140 Hb_000007_140 Hb_001504_330--Hb_000007_140 Hb_031910_020 Hb_031910_020 Hb_001504_330--Hb_031910_020 Hb_000367_260 Hb_000367_260 Hb_001504_330--Hb_000367_260 Hb_003360_040 Hb_003360_040 Hb_001504_330--Hb_003360_040 Hb_000982_080--Hb_003376_250 Hb_011344_190 Hb_011344_190 Hb_000982_080--Hb_011344_190 Hb_001195_200 Hb_001195_200 Hb_000982_080--Hb_001195_200 Hb_008232_010 Hb_008232_010 Hb_000982_080--Hb_008232_010 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_000069_420 Hb_000069_420 Hb_003994_260--Hb_000069_420 Hb_003994_260--Hb_000483_260 Hb_000258_260 Hb_000258_260 Hb_003994_260--Hb_000258_260 Hb_003994_260--Hb_010812_120 Hb_004324_090 Hb_004324_090 Hb_003994_260--Hb_004324_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8 15.4309 10.6778 16.1251 7.50921 10.4087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6445 26.4466 30.5811 19.4842 18.5884

CAGE analysis