Hb_000258_260

Information

Type -
Description -
Location Contig258: 207775-212764
Sequence    

Annotation

kegg
ID rcu:RCOM_0836070
description hypothetical protein
nr
ID XP_012067627.1
description PREDICTED: protein HGH1 homolog [Jatropha curcas]
swissprot
ID Q76NW7
description Protein HGH1 homolog OS=Dictyostelium discoideum GN=DDB_G0276861 PE=3 SV=1
trembl
ID A0A067KYF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15594 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26826: 207826-212756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_260 0.0 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
2 Hb_003994_260 0.0701427575 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
3 Hb_001195_200 0.0749934268 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
4 Hb_012490_070 0.078877627 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000069_420 0.0832028571 - - Beclin-1, putative [Ricinus communis]
6 Hb_000982_080 0.085201292 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
7 Hb_034406_030 0.0858461536 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
8 Hb_000329_760 0.0872688733 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
9 Hb_005446_010 0.092528729 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
10 Hb_001314_070 0.0941208499 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000327_060 0.0951005377 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
12 Hb_001545_170 0.0957033036 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
13 Hb_001663_050 0.0958843526 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
14 Hb_000603_080 0.0979997427 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
15 Hb_065525_090 0.0998335389 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
16 Hb_000250_060 0.1003053067 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
17 Hb_002660_070 0.1021551662 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
18 Hb_004324_090 0.1035879533 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
19 Hb_158445_010 0.1036398366 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
20 Hb_000483_260 0.1038893676 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000258_260 Hb_000258_260 Hb_003994_260 Hb_003994_260 Hb_000258_260--Hb_003994_260 Hb_001195_200 Hb_001195_200 Hb_000258_260--Hb_001195_200 Hb_012490_070 Hb_012490_070 Hb_000258_260--Hb_012490_070 Hb_000069_420 Hb_000069_420 Hb_000258_260--Hb_000069_420 Hb_000982_080 Hb_000982_080 Hb_000258_260--Hb_000982_080 Hb_034406_030 Hb_034406_030 Hb_000258_260--Hb_034406_030 Hb_003994_260--Hb_000069_420 Hb_000483_260 Hb_000483_260 Hb_003994_260--Hb_000483_260 Hb_010812_120 Hb_010812_120 Hb_003994_260--Hb_010812_120 Hb_004324_090 Hb_004324_090 Hb_003994_260--Hb_004324_090 Hb_000603_080 Hb_000603_080 Hb_003994_260--Hb_000603_080 Hb_001195_200--Hb_000982_080 Hb_003768_030 Hb_003768_030 Hb_001195_200--Hb_003768_030 Hb_001489_090 Hb_001489_090 Hb_001195_200--Hb_001489_090 Hb_000327_180 Hb_000327_180 Hb_001195_200--Hb_000327_180 Hb_003376_250 Hb_003376_250 Hb_001195_200--Hb_003376_250 Hb_001545_170 Hb_001545_170 Hb_012490_070--Hb_001545_170 Hb_000250_060 Hb_000250_060 Hb_012490_070--Hb_000250_060 Hb_005539_280 Hb_005539_280 Hb_012490_070--Hb_005539_280 Hb_000120_460 Hb_000120_460 Hb_012490_070--Hb_000120_460 Hb_002197_050 Hb_002197_050 Hb_012490_070--Hb_002197_050 Hb_004994_140 Hb_004994_140 Hb_000069_420--Hb_004994_140 Hb_000069_420--Hb_004324_090 Hb_005846_040 Hb_005846_040 Hb_000069_420--Hb_005846_040 Hb_000069_420--Hb_000250_060 Hb_001633_210 Hb_001633_210 Hb_000069_420--Hb_001633_210 Hb_000982_080--Hb_003376_250 Hb_011344_190 Hb_011344_190 Hb_000982_080--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_000982_080--Hb_005488_200 Hb_008232_010 Hb_008232_010 Hb_000982_080--Hb_008232_010 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_034406_030--Hb_000069_420 Hb_001663_050 Hb_001663_050 Hb_034406_030--Hb_001663_050 Hb_034406_030--Hb_003994_260 Hb_001902_140 Hb_001902_140 Hb_034406_030--Hb_001902_140 Hb_003787_010 Hb_003787_010 Hb_034406_030--Hb_003787_010 Hb_007416_320 Hb_007416_320 Hb_034406_030--Hb_007416_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.36884 9.55475 9.06204 9.64241 9.6874 5.47544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2091 25.5662 20.8582 18.7095 11.4127

CAGE analysis