Hb_011344_190

Information

Type -
Description -
Location Contig11344: 161168-167396
Sequence    

Annotation

kegg
ID rcu:RCOM_1680250
description Maspardin, putative
nr
ID XP_012087104.1
description PREDICTED: maspardin [Jatropha curcas]
swissprot
ID Q5FVD6
description Maspardin OS=Xenopus laevis GN=spg21 PE=2 SV=1
trembl
ID A0A067JNP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20757 PE=4 SV=1
Gene Ontology
ID GO:0016787
description maspardin-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04010: 161250-167387 , PASA_asmbl_04011: 164213-164622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_190 0.0 - - PREDICTED: maspardin [Jatropha curcas]
2 Hb_000982_080 0.0578319604 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
3 Hb_003376_250 0.0589786994 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
4 Hb_008232_010 0.0631187345 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
5 Hb_005488_200 0.0709268852 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
6 Hb_003633_050 0.0721275606 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
7 Hb_001222_080 0.0721858069 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
8 Hb_001218_030 0.0725262094 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
9 Hb_000700_040 0.0754529737 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
10 Hb_003622_040 0.0770853912 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
11 Hb_006420_080 0.0775395753 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000173_410 0.0775823411 - - PREDICTED: BI1-like protein [Jatropha curcas]
13 Hb_001195_200 0.0785875961 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
14 Hb_015778_010 0.0804467126 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
15 Hb_005914_170 0.0806224978 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
16 Hb_000300_430 0.0842151239 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
17 Hb_007218_120 0.0855256472 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
18 Hb_002119_130 0.0878724221 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
19 Hb_005306_180 0.0898862931 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
20 Hb_002284_230 0.0900088358 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]

Gene co-expression network

sample Hb_011344_190 Hb_011344_190 Hb_000982_080 Hb_000982_080 Hb_011344_190--Hb_000982_080 Hb_003376_250 Hb_003376_250 Hb_011344_190--Hb_003376_250 Hb_008232_010 Hb_008232_010 Hb_011344_190--Hb_008232_010 Hb_005488_200 Hb_005488_200 Hb_011344_190--Hb_005488_200 Hb_003633_050 Hb_003633_050 Hb_011344_190--Hb_003633_050 Hb_001222_080 Hb_001222_080 Hb_011344_190--Hb_001222_080 Hb_000982_080--Hb_003376_250 Hb_000982_080--Hb_005488_200 Hb_001195_200 Hb_001195_200 Hb_000982_080--Hb_001195_200 Hb_000982_080--Hb_008232_010 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_003376_250--Hb_005488_200 Hb_003376_250--Hb_001195_200 Hb_000327_180 Hb_000327_180 Hb_003376_250--Hb_000327_180 Hb_007416_060 Hb_007416_060 Hb_003376_250--Hb_007416_060 Hb_001123_160 Hb_001123_160 Hb_008232_010--Hb_001123_160 Hb_004672_010 Hb_004672_010 Hb_008232_010--Hb_004672_010 Hb_003622_040 Hb_003622_040 Hb_008232_010--Hb_003622_040 Hb_015183_060 Hb_015183_060 Hb_008232_010--Hb_015183_060 Hb_005488_200--Hb_007416_060 Hb_148113_010 Hb_148113_010 Hb_005488_200--Hb_148113_010 Hb_000603_080 Hb_000603_080 Hb_005488_200--Hb_000603_080 Hb_003697_040 Hb_003697_040 Hb_005488_200--Hb_003697_040 Hb_000096_160 Hb_000096_160 Hb_003633_050--Hb_000096_160 Hb_001085_240 Hb_001085_240 Hb_003633_050--Hb_001085_240 Hb_005914_170 Hb_005914_170 Hb_003633_050--Hb_005914_170 Hb_003633_050--Hb_003376_250 Hb_019654_030 Hb_019654_030 Hb_003633_050--Hb_019654_030 Hb_000922_040 Hb_000922_040 Hb_001222_080--Hb_000922_040 Hb_000046_350 Hb_000046_350 Hb_001222_080--Hb_000046_350 Hb_004837_160 Hb_004837_160 Hb_001222_080--Hb_004837_160 Hb_089032_030 Hb_089032_030 Hb_001222_080--Hb_089032_030 Hb_001222_080--Hb_008232_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.89641 10.8662 11.4022 24.8137 9.32277 11.4116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.4737 26.1344 26.8145 24.2843 17.6473

CAGE analysis