Hb_004672_010

Information

Type -
Description -
Location Contig4672: 1577-7777
Sequence    

Annotation

kegg
ID rcu:RCOM_0596820
description ecotropic viral integration site, putative
nr
ID XP_002525957.1
description ecotropic viral integration site, putative [Ricinus communis]
swissprot
ID Q9VYY9
description Ecotropic viral integration site 5 ortholog OS=Drosophila melanogaster GN=Evi5 PE=1 SV=3
trembl
ID B9SIY8
description Ecotropic viral integration site, putative OS=Ricinus communis GN=RCOM_0596820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44111: 6426-6630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004672_010 0.0 - - ecotropic viral integration site, putative [Ricinus communis]
2 Hb_005137_060 0.0682926414 - - -
3 Hb_000417_260 0.0719393111 - - protein with unknown function [Ricinus communis]
4 Hb_000046_350 0.0729946562 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008232_010 0.0752584489 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
6 Hb_000072_180 0.0765331369 - - PREDICTED: EVI5-like protein [Jatropha curcas]
7 Hb_027654_050 0.0774042322 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
8 Hb_001481_140 0.082347352 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
9 Hb_001222_080 0.0845181672 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
10 Hb_003462_120 0.0850093455 - - Acidic endochitinase [Theobroma cacao]
11 Hb_000820_090 0.0899220446 - - -
12 Hb_001005_080 0.0914323614 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
13 Hb_114310_080 0.0919092413 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002007_210 0.0919504247 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
15 Hb_003291_020 0.0923427312 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
16 Hb_000673_020 0.0923454639 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
17 Hb_000635_150 0.0929837166 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
18 Hb_028515_010 0.0932291836 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
19 Hb_004837_160 0.0938091038 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
20 Hb_000934_190 0.0947640621 - - SER/ARG-rich protein 34A [Theobroma cacao]

Gene co-expression network

sample Hb_004672_010 Hb_004672_010 Hb_005137_060 Hb_005137_060 Hb_004672_010--Hb_005137_060 Hb_000417_260 Hb_000417_260 Hb_004672_010--Hb_000417_260 Hb_000046_350 Hb_000046_350 Hb_004672_010--Hb_000046_350 Hb_008232_010 Hb_008232_010 Hb_004672_010--Hb_008232_010 Hb_000072_180 Hb_000072_180 Hb_004672_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050 Hb_003462_120 Hb_003462_120 Hb_005137_060--Hb_003462_120 Hb_001005_080 Hb_001005_080 Hb_005137_060--Hb_001005_080 Hb_001481_140 Hb_001481_140 Hb_005137_060--Hb_001481_140 Hb_001222_080 Hb_001222_080 Hb_005137_060--Hb_001222_080 Hb_000922_040 Hb_000922_040 Hb_005137_060--Hb_000922_040 Hb_005278_040 Hb_005278_040 Hb_000417_260--Hb_005278_040 Hb_000417_260--Hb_001005_080 Hb_000384_120 Hb_000384_120 Hb_000417_260--Hb_000384_120 Hb_001008_090 Hb_001008_090 Hb_000417_260--Hb_001008_090 Hb_000417_260--Hb_001481_140 Hb_000046_350--Hb_000072_180 Hb_000046_350--Hb_001222_080 Hb_001284_030 Hb_001284_030 Hb_000046_350--Hb_001284_030 Hb_148113_010 Hb_148113_010 Hb_000046_350--Hb_148113_010 Hb_006420_100 Hb_006420_100 Hb_000046_350--Hb_006420_100 Hb_000982_080 Hb_000982_080 Hb_008232_010--Hb_000982_080 Hb_001123_160 Hb_001123_160 Hb_008232_010--Hb_001123_160 Hb_011344_190 Hb_011344_190 Hb_008232_010--Hb_011344_190 Hb_003622_040 Hb_003622_040 Hb_008232_010--Hb_003622_040 Hb_015183_060 Hb_015183_060 Hb_008232_010--Hb_015183_060 Hb_000072_180--Hb_006420_100 Hb_028515_010 Hb_028515_010 Hb_000072_180--Hb_028515_010 Hb_027625_010 Hb_027625_010 Hb_000072_180--Hb_027625_010 Hb_000072_180--Hb_148113_010 Hb_001776_160 Hb_001776_160 Hb_027654_050--Hb_001776_160 Hb_017225_020 Hb_017225_020 Hb_027654_050--Hb_017225_020 Hb_001512_080 Hb_001512_080 Hb_027654_050--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_027654_050--Hb_002110_200 Hb_001904_090 Hb_001904_090 Hb_027654_050--Hb_001904_090 Hb_000254_050 Hb_000254_050 Hb_027654_050--Hb_000254_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.21796 2.72822 4.03383 9.4027 2.81712 5.80397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7377 14.3538 13.7931 9.43811 5.41903

CAGE analysis