Hb_001512_080

Information

Type -
Description -
Location Contig1512: 83847-87939
Sequence    

Annotation

kegg
ID cic:CICLE_v10016241mg
description hypothetical protein
nr
ID XP_012071670.1
description PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
swissprot
ID Q7DLS1
description Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2
trembl
ID A0A067LD28
description Proteasome subunit beta type OS=Jatropha curcas GN=JCGZ_10226 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit beta type-7-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12807: 83823-87903 , PASA_asmbl_12808: 84434-84892
cDNA
(Sanger)
(ID:Location)		 049_O22.ab1: 84983-87833

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001512_080 0.0 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
2 Hb_002110_200 0.0558747265 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_000224_140 0.0567481211 - - ribonuclease z, chloroplast, putative [Ricinus communis]
4 Hb_000254_050 0.0596144073 - - hypothetical protein VITISV_010510 [Vitis vinifera]
5 Hb_001085_120 0.065180666 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
6 Hb_027654_050 0.0695465104 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
7 Hb_000453_120 0.0695996258 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
8 Hb_001776_160 0.0699460091 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
9 Hb_007576_170 0.0732223327 - - conserved hypothetical protein [Ricinus communis]
10 Hb_068056_030 0.0737327057 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
11 Hb_002000_140 0.0743417717 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
12 Hb_005463_140 0.0753063843 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
13 Hb_004459_040 0.0753516582 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
14 Hb_000789_230 0.0769800097 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
15 Hb_007065_010 0.0774217414 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
16 Hb_179296_010 0.0831569446 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
17 Hb_000571_020 0.0834361714 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
18 Hb_005181_030 0.0838204108 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
19 Hb_072922_020 0.0839411639 - - SNARE-like superfamily protein [Theobroma cacao]
20 Hb_000567_410 0.0850001504 - - hypothetical protein JCGZ_12784 [Jatropha curcas]

Gene co-expression network

sample Hb_001512_080 Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_001512_080--Hb_002110_200 Hb_000224_140 Hb_000224_140 Hb_001512_080--Hb_000224_140 Hb_000254_050 Hb_000254_050 Hb_001512_080--Hb_000254_050 Hb_001085_120 Hb_001085_120 Hb_001512_080--Hb_001085_120 Hb_027654_050 Hb_027654_050 Hb_001512_080--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_001512_080--Hb_000453_120 Hb_002110_200--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_002110_200--Hb_000789_230 Hb_001776_160 Hb_001776_160 Hb_002110_200--Hb_001776_160 Hb_002110_200--Hb_027654_050 Hb_002110_200--Hb_000453_120 Hb_068056_030 Hb_068056_030 Hb_000224_140--Hb_068056_030 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_003349_080 Hb_003349_080 Hb_000224_140--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_000224_140--Hb_000318_160 Hb_005463_140 Hb_005463_140 Hb_000224_140--Hb_005463_140 Hb_000016_080 Hb_000016_080 Hb_000254_050--Hb_000016_080 Hb_000254_050--Hb_000789_230 Hb_000571_020 Hb_000571_020 Hb_000254_050--Hb_000571_020 Hb_005269_080 Hb_005269_080 Hb_000254_050--Hb_005269_080 Hb_001085_120--Hb_000453_120 Hb_000103_010 Hb_000103_010 Hb_001085_120--Hb_000103_010 Hb_001484_070 Hb_001484_070 Hb_001085_120--Hb_001484_070 Hb_001085_120--Hb_001776_160 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360 Hb_027654_050--Hb_001776_160 Hb_017225_020 Hb_017225_020 Hb_027654_050--Hb_017225_020 Hb_001904_090 Hb_001904_090 Hb_027654_050--Hb_001904_090 Hb_027654_050--Hb_000254_050 Hb_000453_120--Hb_001484_070 Hb_000086_280 Hb_000086_280 Hb_000453_120--Hb_000086_280 Hb_003077_040 Hb_003077_040 Hb_000453_120--Hb_003077_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.3463 18.3688 54.9736 59.6757 38.3173 52.1373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.277 191.635 111.846 58.084 53.2026

CAGE analysis