Hb_000254_050

Information

Type -
Description -
Location Contig254: 71716-93679
Sequence    

Annotation

kegg
ID vvi:100249742
description ras-related protein Rab7
nr
ID CAN75406.1
description hypothetical protein VITISV_010510 [Vitis vinifera]
swissprot
ID Q9XER8
description Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1
trembl
ID A5C8F3
description Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_010510 PE=3 SV=1
Gene Ontology
ID GO:0016021
description sulfite exporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26524: 71794-74521 , PASA_asmbl_26526: 81578-82072 , PASA_asmbl_26527: 89278-90075 , PASA_asmbl_26528: 90652-91234
cDNA
(Sanger)
(ID:Location)		 010_G03.ab1: 74812-75402 , 015_B02.ab1: 71802-73286 , 021_K08.ab1: 71794-74232

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_050 0.0 - - hypothetical protein VITISV_010510 [Vitis vinifera]
2 Hb_002110_200 0.0464844244 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_001512_080 0.0596144073 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
4 Hb_000016_080 0.0646589225 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
5 Hb_000789_230 0.0680736311 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
6 Hb_000571_020 0.0704673182 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
7 Hb_005269_080 0.0727124034 - - protein with unknown function [Ricinus communis]
8 Hb_027654_050 0.0728774934 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
9 Hb_011381_080 0.0733515535 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
10 Hb_072922_020 0.0750262028 - - SNARE-like superfamily protein [Theobroma cacao]
11 Hb_002000_140 0.080673065 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
12 Hb_001329_150 0.0816527445 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
13 Hb_000735_090 0.0826344782 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
14 Hb_000384_120 0.0843027056 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
15 Hb_001776_160 0.0851554154 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
16 Hb_002303_060 0.0857105423 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007065_010 0.0858888309 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
18 Hb_005463_140 0.0871030353 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
19 Hb_000922_040 0.0874932083 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
20 Hb_000120_020 0.0877475457 - - PREDICTED: inositol 3-kinase [Jatropha curcas]

Gene co-expression network

sample Hb_000254_050 Hb_000254_050 Hb_002110_200 Hb_002110_200 Hb_000254_050--Hb_002110_200 Hb_001512_080 Hb_001512_080 Hb_000254_050--Hb_001512_080 Hb_000016_080 Hb_000016_080 Hb_000254_050--Hb_000016_080 Hb_000789_230 Hb_000789_230 Hb_000254_050--Hb_000789_230 Hb_000571_020 Hb_000571_020 Hb_000254_050--Hb_000571_020 Hb_005269_080 Hb_005269_080 Hb_000254_050--Hb_005269_080 Hb_002110_200--Hb_001512_080 Hb_002110_200--Hb_000789_230 Hb_001776_160 Hb_001776_160 Hb_002110_200--Hb_001776_160 Hb_027654_050 Hb_027654_050 Hb_002110_200--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_002110_200--Hb_000453_120 Hb_000224_140 Hb_000224_140 Hb_001512_080--Hb_000224_140 Hb_001085_120 Hb_001085_120 Hb_001512_080--Hb_001085_120 Hb_001512_080--Hb_027654_050 Hb_001512_080--Hb_000453_120 Hb_000016_080--Hb_000789_230 Hb_007065_010 Hb_007065_010 Hb_000016_080--Hb_007065_010 Hb_000735_090 Hb_000735_090 Hb_000016_080--Hb_000735_090 Hb_001728_060 Hb_001728_060 Hb_000016_080--Hb_001728_060 Hb_002613_020 Hb_002613_020 Hb_000016_080--Hb_002613_020 Hb_000789_230--Hb_007065_010 Hb_017413_010 Hb_017413_010 Hb_000789_230--Hb_017413_010 Hb_005463_140 Hb_005463_140 Hb_000789_230--Hb_005463_140 Hb_000302_140 Hb_000302_140 Hb_000571_020--Hb_000302_140 Hb_001329_150 Hb_001329_150 Hb_000571_020--Hb_001329_150 Hb_000538_120 Hb_000538_120 Hb_000571_020--Hb_000538_120 Hb_000189_240 Hb_000189_240 Hb_000571_020--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000571_020--Hb_000731_190 Hb_002303_060 Hb_002303_060 Hb_005269_080--Hb_002303_060 Hb_000922_040 Hb_000922_040 Hb_005269_080--Hb_000922_040 Hb_000384_120 Hb_000384_120 Hb_005269_080--Hb_000384_120 Hb_001053_140 Hb_001053_140 Hb_005269_080--Hb_001053_140 Hb_000701_100 Hb_000701_100 Hb_005269_080--Hb_000701_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11542 2.37919 4.94773 8.47294 4.53505 4.76975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0258 17.9751 11.1458 6.4991 6.09611

CAGE analysis