Hb_000189_240

Information

Type -
Description -
Location Contig189: 244105-247044
Sequence    

Annotation

kegg
ID egr:104432509
description PITH domain-containing protein At3g04780
nr
ID XP_012089246.1
description PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
swissprot
ID Q9SQZ9
description PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana GN=At3g04780 PE=1 SV=2
trembl
ID A0A067JIE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23485 PE=4 SV=1
Gene Ontology
ID GO:0005623
description pith domain-containing protein at3g04780

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18664: 244103-247013
cDNA
(Sanger)
(ID:Location)		 043_H10.ab1: 244262-247009

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_240 0.0 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
2 Hb_000826_100 0.0600639967 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
3 Hb_026053_020 0.0610429225 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
4 Hb_002000_140 0.0633970313 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
5 Hb_003605_160 0.0639940854 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
6 Hb_002303_060 0.066203019 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008071_020 0.0684653404 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
8 Hb_028396_010 0.0708995841 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
9 Hb_000571_020 0.0723246356 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
10 Hb_006915_040 0.0730721261 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
11 Hb_001053_140 0.0737805455 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
12 Hb_001329_150 0.0769391548 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
13 Hb_010175_040 0.0778335106 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
14 Hb_000261_140 0.0797809442 - - -
15 Hb_143766_010 0.083869833 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
16 Hb_018124_010 0.0840993891 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
17 Hb_010560_030 0.0857369732 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
18 Hb_009182_010 0.0857760952 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
19 Hb_005269_080 0.0859755206 - - protein with unknown function [Ricinus communis]
20 Hb_003018_020 0.086490169 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_240 Hb_000189_240 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_026053_020 Hb_026053_020 Hb_000189_240--Hb_026053_020 Hb_002000_140 Hb_002000_140 Hb_000189_240--Hb_002000_140 Hb_003605_160 Hb_003605_160 Hb_000189_240--Hb_003605_160 Hb_002303_060 Hb_002303_060 Hb_000189_240--Hb_002303_060 Hb_008071_020 Hb_008071_020 Hb_000189_240--Hb_008071_020 Hb_000826_100--Hb_003605_160 Hb_007441_330 Hb_007441_330 Hb_000826_100--Hb_007441_330 Hb_000826_100--Hb_008071_020 Hb_026314_020 Hb_026314_020 Hb_000826_100--Hb_026314_020 Hb_000826_100--Hb_026053_020 Hb_131181_010 Hb_131181_010 Hb_026053_020--Hb_131181_010 Hb_026053_020--Hb_008071_020 Hb_000996_140 Hb_000996_140 Hb_026053_020--Hb_000996_140 Hb_018133_020 Hb_018133_020 Hb_026053_020--Hb_018133_020 Hb_001141_140 Hb_001141_140 Hb_026053_020--Hb_001141_140 Hb_002000_140--Hb_002303_060 Hb_000431_070 Hb_000431_070 Hb_002000_140--Hb_000431_070 Hb_001512_080 Hb_001512_080 Hb_002000_140--Hb_001512_080 Hb_001329_150 Hb_001329_150 Hb_002000_140--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_002000_140--Hb_005269_080 Hb_003605_160--Hb_002303_060 Hb_003605_160--Hb_002000_140 Hb_003605_160--Hb_008071_020 Hb_003605_160--Hb_001329_150 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_001931_010 Hb_001931_010 Hb_008071_020--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_008071_020--Hb_001279_080 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.0003 15.4339 48.7797 62.8806 21.8389 31.6658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.3697 119.162 61.3216 37.8419 28.3966

CAGE analysis