Hb_002303_060

Information

Type -
Description -
Location Contig2303: 77098-77547
Sequence    

Annotation

kegg
ID rcu:RCOM_0442770
description hypothetical protein
nr
ID XP_002532782.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3G3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0442770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002303_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005269_080 0.0590541487 - - protein with unknown function [Ricinus communis]
3 Hb_001053_140 0.0603934455 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
4 Hb_000189_240 0.066203019 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
5 Hb_002314_010 0.0692890712 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
6 Hb_003605_160 0.0719031754 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
7 Hb_000107_300 0.0722354079 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
8 Hb_002000_140 0.072264377 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
9 Hb_001329_150 0.0765728111 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
10 Hb_000009_290 0.0780236591 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
11 Hb_000638_170 0.0798759458 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
12 Hb_001353_010 0.0807648273 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
13 Hb_148209_010 0.0824889687 - - RAS-related GTP-binding family protein [Populus trichocarpa]
14 Hb_008071_020 0.0836041145 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
15 Hb_000701_100 0.0839151138 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
16 Hb_006326_040 0.085612551 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000254_050 0.0857105423 - - hypothetical protein VITISV_010510 [Vitis vinifera]
18 Hb_000808_190 0.0860471802 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
19 Hb_000571_020 0.0876640409 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
20 Hb_010560_030 0.0881718306 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002303_060 Hb_002303_060 Hb_005269_080 Hb_005269_080 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_000922_040 Hb_000922_040 Hb_005269_080--Hb_000922_040 Hb_000254_050 Hb_000254_050 Hb_005269_080--Hb_000254_050 Hb_000384_120 Hb_000384_120 Hb_005269_080--Hb_000384_120 Hb_005269_080--Hb_001053_140 Hb_000701_100 Hb_000701_100 Hb_005269_080--Hb_000701_100 Hb_001329_150 Hb_001329_150 Hb_001053_140--Hb_001329_150 Hb_000419_070 Hb_000419_070 Hb_001053_140--Hb_000419_070 Hb_010560_030 Hb_010560_030 Hb_001053_140--Hb_010560_030 Hb_001053_140--Hb_000189_240 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_026053_020 Hb_026053_020 Hb_000189_240--Hb_026053_020 Hb_002000_140 Hb_002000_140 Hb_000189_240--Hb_002000_140 Hb_000189_240--Hb_003605_160 Hb_008071_020 Hb_008071_020 Hb_000189_240--Hb_008071_020 Hb_000215_330 Hb_000215_330 Hb_002314_010--Hb_000215_330 Hb_002314_010--Hb_000107_300 Hb_005306_070 Hb_005306_070 Hb_002314_010--Hb_005306_070 Hb_002314_010--Hb_001053_140 Hb_002314_010--Hb_003605_160 Hb_003605_160--Hb_000826_100 Hb_003605_160--Hb_002000_140 Hb_003605_160--Hb_008071_020 Hb_003605_160--Hb_001329_150 Hb_000107_300--Hb_000215_330 Hb_003376_190 Hb_003376_190 Hb_000107_300--Hb_003376_190 Hb_000107_300--Hb_005306_070 Hb_000107_300--Hb_000826_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.6352 5.35362 12.9702 24.3246 5.76692 8.86883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.225 34.1682 19.1866 10.7638 10.7946

CAGE analysis