Hb_001329_150

Information

Type -
Description -
Location Contig1329: 94449-97151
Sequence    

Annotation

kegg
ID rcu:RCOM_1344100
description autophagy 8h, putative
nr
ID XP_012082976.1
description PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
swissprot
ID Q9LRP7
description Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1
trembl
ID A0A067K7T1
description Autophagy-related protein OS=Jatropha curcas GN=JCGZ_14091 PE=3 SV=1
Gene Ontology
ID GO:0006914
description autophagy-related protein 8i-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09400: 94444-97121 , PASA_asmbl_09401: 96490-96875
cDNA
(Sanger)
(ID:Location)		 030_P02.ab1: 94444-97053

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_150 0.0 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
2 Hb_001053_140 0.058890699 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
3 Hb_000419_070 0.0651298525 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
4 Hb_000571_020 0.0682840238 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
5 Hb_002000_140 0.075096789 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
6 Hb_002303_060 0.0765728111 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000189_240 0.0769391548 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
8 Hb_008071_020 0.0816009225 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
9 Hb_000254_050 0.0816527445 - - hypothetical protein VITISV_010510 [Vitis vinifera]
10 Hb_026053_020 0.0816998649 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
11 Hb_003880_030 0.0839284721 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
12 Hb_000676_390 0.0841106048 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
13 Hb_000431_070 0.0856021037 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
14 Hb_003849_150 0.0871402382 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
15 Hb_004057_010 0.088672559 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
16 Hb_002110_200 0.0895797671 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_001279_080 0.0898441898 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
18 Hb_131181_010 0.0900715674 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
19 Hb_001512_080 0.0902047604 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
20 Hb_010560_030 0.091760631 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001329_150 Hb_001329_150 Hb_001053_140 Hb_001053_140 Hb_001329_150--Hb_001053_140 Hb_000419_070 Hb_000419_070 Hb_001329_150--Hb_000419_070 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_002000_140 Hb_002000_140 Hb_001329_150--Hb_002000_140 Hb_002303_060 Hb_002303_060 Hb_001329_150--Hb_002303_060 Hb_000189_240 Hb_000189_240 Hb_001329_150--Hb_000189_240 Hb_001053_140--Hb_002303_060 Hb_001053_140--Hb_000419_070 Hb_010560_030 Hb_010560_030 Hb_001053_140--Hb_010560_030 Hb_001053_140--Hb_000189_240 Hb_005269_080 Hb_005269_080 Hb_001053_140--Hb_005269_080 Hb_011485_020 Hb_011485_020 Hb_000419_070--Hb_011485_020 Hb_011512_040 Hb_011512_040 Hb_000419_070--Hb_011512_040 Hb_010883_050 Hb_010883_050 Hb_000419_070--Hb_010883_050 Hb_000419_070--Hb_002303_060 Hb_000302_140 Hb_000302_140 Hb_000571_020--Hb_000302_140 Hb_000538_120 Hb_000538_120 Hb_000571_020--Hb_000538_120 Hb_000254_050 Hb_000254_050 Hb_000571_020--Hb_000254_050 Hb_000571_020--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000571_020--Hb_000731_190 Hb_002000_140--Hb_000189_240 Hb_002000_140--Hb_002303_060 Hb_000431_070 Hb_000431_070 Hb_002000_140--Hb_000431_070 Hb_001512_080 Hb_001512_080 Hb_002000_140--Hb_001512_080 Hb_002000_140--Hb_005269_080 Hb_002303_060--Hb_005269_080 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_026053_020 Hb_026053_020 Hb_000189_240--Hb_026053_020 Hb_000189_240--Hb_003605_160 Hb_008071_020 Hb_008071_020 Hb_000189_240--Hb_008071_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7208 6.50262 21.3493 24.6709 9.91379 9.36276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.3414 51.094 28.1819 14.7336 20.7127

CAGE analysis