Hb_002000_140

Information

Type -
Description -
Location Contig2000: 141392-145708
Sequence    

Annotation

kegg
ID rcu:RCOM_0959340
description thioredoxin m(mitochondrial)-type, putative (EC:5.3.4.1)
nr
ID XP_012080734.1
description PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
swissprot
ID Q8L7S9
description Thioredoxin Y2, chloroplastic OS=Arabidopsis thaliana GN=At1g43560 PE=2 SV=1
trembl
ID A0A067K3I0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15185 PE=4 SV=1
Gene Ontology
ID GO:0015035
description thioredoxin chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20260: 141528-145658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002000_140 0.0 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
2 Hb_000189_240 0.0633970313 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
3 Hb_002303_060 0.072264377 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000431_070 0.0736349383 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
5 Hb_001512_080 0.0743417717 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
6 Hb_001329_150 0.075096789 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
7 Hb_005269_080 0.076310425 - - protein with unknown function [Ricinus communis]
8 Hb_003605_160 0.0763684146 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
9 Hb_006915_040 0.0763977405 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
10 Hb_000808_190 0.0798616664 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
11 Hb_000254_050 0.080673065 - - hypothetical protein VITISV_010510 [Vitis vinifera]
12 Hb_000571_020 0.0822168894 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
13 Hb_002110_200 0.0827628067 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_004055_070 0.0833676726 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
15 Hb_007576_170 0.0841503425 - - conserved hypothetical protein [Ricinus communis]
16 Hb_033153_060 0.0852065418 - - Transcription elongation factor, putative [Ricinus communis]
17 Hb_027654_050 0.0857863499 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
18 Hb_000087_130 0.0858173807 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
19 Hb_000701_100 0.0866501472 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
20 Hb_072922_020 0.0868963243 - - SNARE-like superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_002000_140 Hb_002000_140 Hb_000189_240 Hb_000189_240 Hb_002000_140--Hb_000189_240 Hb_002303_060 Hb_002303_060 Hb_002000_140--Hb_002303_060 Hb_000431_070 Hb_000431_070 Hb_002000_140--Hb_000431_070 Hb_001512_080 Hb_001512_080 Hb_002000_140--Hb_001512_080 Hb_001329_150 Hb_001329_150 Hb_002000_140--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_002000_140--Hb_005269_080 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_026053_020 Hb_026053_020 Hb_000189_240--Hb_026053_020 Hb_003605_160 Hb_003605_160 Hb_000189_240--Hb_003605_160 Hb_000189_240--Hb_002303_060 Hb_008071_020 Hb_008071_020 Hb_000189_240--Hb_008071_020 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_007576_170 Hb_007576_170 Hb_000431_070--Hb_007576_170 Hb_002613_020 Hb_002613_020 Hb_000431_070--Hb_002613_020 Hb_000045_310 Hb_000045_310 Hb_000431_070--Hb_000045_310 Hb_001279_080 Hb_001279_080 Hb_000431_070--Hb_001279_080 Hb_087749_010 Hb_087749_010 Hb_000431_070--Hb_087749_010 Hb_002110_200 Hb_002110_200 Hb_001512_080--Hb_002110_200 Hb_000224_140 Hb_000224_140 Hb_001512_080--Hb_000224_140 Hb_000254_050 Hb_000254_050 Hb_001512_080--Hb_000254_050 Hb_001085_120 Hb_001085_120 Hb_001512_080--Hb_001085_120 Hb_027654_050 Hb_027654_050 Hb_001512_080--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_001512_080--Hb_000453_120 Hb_001329_150--Hb_001053_140 Hb_000419_070 Hb_000419_070 Hb_001329_150--Hb_000419_070 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_001329_150--Hb_002303_060 Hb_001329_150--Hb_000189_240 Hb_000922_040 Hb_000922_040 Hb_005269_080--Hb_000922_040 Hb_005269_080--Hb_000254_050 Hb_000384_120 Hb_000384_120 Hb_005269_080--Hb_000384_120 Hb_005269_080--Hb_001053_140 Hb_000701_100 Hb_000701_100 Hb_005269_080--Hb_000701_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.71461 4.95234 15.1766 20.0634 6.37088 13.1145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.4366 41.1651 21.3027 12.2731 12.417

CAGE analysis