Hb_000922_040

Information

Type -
Description -
Location Contig922: 58636-61163
Sequence    

Annotation

kegg
ID rcu:RCOM_1510780
description hypothetical protein
nr
ID XP_012080078.1
description PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
swissprot
ID Q84WP5
description CASP-like protein 4A3 OS=Arabidopsis thaliana GN=At2g36330 PE=2 SV=1
trembl
ID A0A067K7V6
description CASP-like protein OS=Jatropha curcas GN=JCGZ_11484 PE=3 SV=1
Gene Ontology
ID GO:0016020
description casp-like protein aralydraft_482607

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_040 0.0 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
2 Hb_005269_080 0.065763311 - - protein with unknown function [Ricinus communis]
3 Hb_000384_120 0.0714703597 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
4 Hb_001222_080 0.0729333262 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
5 Hb_002016_080 0.0761038312 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
6 Hb_000701_100 0.0796194284 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
7 Hb_001410_060 0.0850332406 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
8 Hb_148209_010 0.0850570062 - - RAS-related GTP-binding family protein [Populus trichocarpa]
9 Hb_003880_030 0.0851531955 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
10 Hb_000377_120 0.0860116469 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
11 Hb_000254_050 0.0874932083 - - hypothetical protein VITISV_010510 [Vitis vinifera]
12 Hb_033642_080 0.0876306959 - - V-type proton ATPase subunit E [Hevea brasiliensis]
13 Hb_002631_180 0.0898811591 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
14 Hb_000136_350 0.090605117 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
15 Hb_000571_020 0.0906414657 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
16 Hb_002303_060 0.0907459229 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008232_010 0.0912684523 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
18 Hb_000009_290 0.0916161645 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
19 Hb_072922_020 0.0926400795 - - SNARE-like superfamily protein [Theobroma cacao]
20 Hb_000896_040 0.0930914993 - - BnaC02g13240D [Brassica napus]

Gene co-expression network

sample Hb_000922_040 Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000922_040--Hb_005269_080 Hb_000384_120 Hb_000384_120 Hb_000922_040--Hb_000384_120 Hb_001222_080 Hb_001222_080 Hb_000922_040--Hb_001222_080 Hb_002016_080 Hb_002016_080 Hb_000922_040--Hb_002016_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060 Hb_002303_060 Hb_002303_060 Hb_005269_080--Hb_002303_060 Hb_000254_050 Hb_000254_050 Hb_005269_080--Hb_000254_050 Hb_005269_080--Hb_000384_120 Hb_001053_140 Hb_001053_140 Hb_005269_080--Hb_001053_140 Hb_005269_080--Hb_000701_100 Hb_072922_020 Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010 Hb_011344_190 Hb_011344_190 Hb_001222_080--Hb_011344_190 Hb_000046_350 Hb_000046_350 Hb_001222_080--Hb_000046_350 Hb_004837_160 Hb_004837_160 Hb_001222_080--Hb_004837_160 Hb_089032_030 Hb_089032_030 Hb_001222_080--Hb_089032_030 Hb_008232_010 Hb_008232_010 Hb_001222_080--Hb_008232_010 Hb_013405_140 Hb_013405_140 Hb_002016_080--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_002016_080--Hb_011485_020 Hb_000673_020 Hb_000673_020 Hb_002016_080--Hb_000673_020 Hb_000413_280 Hb_000413_280 Hb_002016_080--Hb_000413_280 Hb_003783_030 Hb_003783_030 Hb_002016_080--Hb_003783_030 Hb_001057_040 Hb_001057_040 Hb_000701_100--Hb_001057_040 Hb_004899_370 Hb_004899_370 Hb_000701_100--Hb_004899_370 Hb_000805_240 Hb_000805_240 Hb_000701_100--Hb_000805_240 Hb_000005_090 Hb_000005_090 Hb_000701_100--Hb_000005_090 Hb_003414_050 Hb_003414_050 Hb_000701_100--Hb_003414_050 Hb_000377_120 Hb_000377_120 Hb_001410_060--Hb_000377_120 Hb_000563_200 Hb_000563_200 Hb_001410_060--Hb_000563_200 Hb_003880_040 Hb_003880_040 Hb_001410_060--Hb_003880_040 Hb_005306_070 Hb_005306_070 Hb_001410_060--Hb_005306_070 Hb_001410_060--Hb_005269_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42426 2.287 2.22475 4.95668 1.26921 2.20589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.29832 9.32174 4.9609 3.96201 2.71211

CAGE analysis