Hb_000413_280

Information

Type -
Description -
Location Contig413: 227766-230911
Sequence    

Annotation

kegg
ID pmum:103324485
description probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial
nr
ID XP_012091419.1
description PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
swissprot
ID F4JIP6
description Probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial OS=Arabidopsis thaliana GN=LPXD2 PE=3 SV=1
trembl
ID A0A067JDI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21279 PE=4 SV=1
Gene Ontology
ID GO:0008780
description probable udp-3-o-acylglucosamine n-acyltransferase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40954: 227749-230877 , PASA_asmbl_40955: 227772-230861
cDNA
(Sanger)
(ID:Location)		 004_L10.ab1: 227772-229746 , 012_A16.ab1: 227778-228596 , 027_P17.ab1: 227772-229618

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_280 0.0 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
2 Hb_000538_120 0.0721014636 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
3 Hb_011671_440 0.0736159064 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
4 Hb_002016_080 0.0772394624 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
5 Hb_000302_140 0.0805822768 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
6 Hb_000571_020 0.0844158122 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
7 Hb_004705_080 0.0903879586 transcription factor TF Family: ARF transcription factor, putative [Ricinus communis]
8 Hb_003994_260 0.0906884687 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
9 Hb_003622_040 0.090940711 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
10 Hb_091433_020 0.096527844 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
11 Hb_180074_010 0.0974342203 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
12 Hb_000163_050 0.0985597627 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
13 Hb_000896_040 0.1001642896 - - BnaC02g13240D [Brassica napus]
14 Hb_000922_040 0.1010041594 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
15 Hb_008232_010 0.1016183564 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
16 Hb_003098_020 0.1021293469 - - 40S ribosomal protein S5B [Hevea brasiliensis]
17 Hb_000934_190 0.102700392 - - SER/ARG-rich protein 34A [Theobroma cacao]
18 Hb_000731_190 0.1029581865 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
19 Hb_001123_160 0.1041030894 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_002304_160 0.1046015759 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000413_280 Hb_000413_280 Hb_000538_120 Hb_000538_120 Hb_000413_280--Hb_000538_120 Hb_011671_440 Hb_011671_440 Hb_000413_280--Hb_011671_440 Hb_002016_080 Hb_002016_080 Hb_000413_280--Hb_002016_080 Hb_000302_140 Hb_000302_140 Hb_000413_280--Hb_000302_140 Hb_000571_020 Hb_000571_020 Hb_000413_280--Hb_000571_020 Hb_004705_080 Hb_004705_080 Hb_000413_280--Hb_004705_080 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000136_260 Hb_000136_260 Hb_000538_120--Hb_000136_260 Hb_000538_120--Hb_000302_140 Hb_007928_030 Hb_007928_030 Hb_000538_120--Hb_007928_030 Hb_000538_120--Hb_000571_020 Hb_091433_020 Hb_091433_020 Hb_011671_440--Hb_091433_020 Hb_005914_010 Hb_005914_010 Hb_011671_440--Hb_005914_010 Hb_004767_080 Hb_004767_080 Hb_011671_440--Hb_004767_080 Hb_180074_010 Hb_180074_010 Hb_011671_440--Hb_180074_010 Hb_011671_440--Hb_000538_120 Hb_013405_140 Hb_013405_140 Hb_002016_080--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_002016_080--Hb_011485_020 Hb_000922_040 Hb_000922_040 Hb_002016_080--Hb_000922_040 Hb_000673_020 Hb_000673_020 Hb_002016_080--Hb_000673_020 Hb_003783_030 Hb_003783_030 Hb_002016_080--Hb_003783_030 Hb_000302_140--Hb_000571_020 Hb_001341_150 Hb_001341_150 Hb_000302_140--Hb_001341_150 Hb_000085_350 Hb_000085_350 Hb_000302_140--Hb_000085_350 Hb_028396_010 Hb_028396_010 Hb_000302_140--Hb_028396_010 Hb_001329_150 Hb_001329_150 Hb_000571_020--Hb_001329_150 Hb_000254_050 Hb_000254_050 Hb_000571_020--Hb_000254_050 Hb_000189_240 Hb_000189_240 Hb_000571_020--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000571_020--Hb_000731_190 Hb_008566_050 Hb_008566_050 Hb_004705_080--Hb_008566_050 Hb_000111_450 Hb_000111_450 Hb_004705_080--Hb_000111_450 Hb_012760_070 Hb_012760_070 Hb_004705_080--Hb_012760_070 Hb_004705_080--Hb_002016_080 Hb_000424_200 Hb_000424_200 Hb_004705_080--Hb_000424_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93926 2.51641 4.6401 4.59965 2.01742 2.21646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.04779 9.5444 6.85233 6.33308 2.44019

CAGE analysis