Hb_003783_030

Information

Type -
Description -
Location Contig3783: 69850-75863
Sequence    

Annotation

kegg
ID pop:POPTR_0018s13980g
description POPTRDRAFT_579038; hypothetical protein
nr
ID XP_006372186.1
description hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FFZ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s13980g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38497: 69834-75826
cDNA
(Sanger)
(ID:Location)		 022_D23.ab1: 69988-75826

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003783_030 0.0 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
2 Hb_013405_140 0.0726884755 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
3 Hb_002016_080 0.0780431228 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
4 Hb_007037_020 0.0852936395 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
5 Hb_000673_020 0.087557449 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
6 Hb_001481_140 0.0926345517 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
7 Hb_003462_120 0.096113402 - - Acidic endochitinase [Theobroma cacao]
8 Hb_001172_120 0.0975495029 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
9 Hb_011021_040 0.1023547989 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
10 Hb_005568_120 0.1024524081 - - Prephenate dehydratase [Hevea brasiliensis]
11 Hb_007192_100 0.1031581861 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
12 Hb_028515_010 0.1041138168 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
13 Hb_005656_100 0.1041763529 - - conserved hypothetical protein [Ricinus communis]
14 Hb_033642_080 0.1047957786 - - V-type proton ATPase subunit E [Hevea brasiliensis]
15 Hb_180074_010 0.1059401954 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
16 Hb_013399_050 0.106237082 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
17 Hb_000258_260 0.1085990216 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
18 Hb_000111_450 0.1088478105 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
19 Hb_032208_060 0.109445821 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
20 Hb_002660_070 0.1096725498 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]

Gene co-expression network

sample Hb_003783_030 Hb_003783_030 Hb_013405_140 Hb_013405_140 Hb_003783_030--Hb_013405_140 Hb_002016_080 Hb_002016_080 Hb_003783_030--Hb_002016_080 Hb_007037_020 Hb_007037_020 Hb_003783_030--Hb_007037_020 Hb_000673_020 Hb_000673_020 Hb_003783_030--Hb_000673_020 Hb_001481_140 Hb_001481_140 Hb_003783_030--Hb_001481_140 Hb_003462_120 Hb_003462_120 Hb_003783_030--Hb_003462_120 Hb_013405_140--Hb_002016_080 Hb_011485_020 Hb_011485_020 Hb_013405_140--Hb_011485_020 Hb_013405_140--Hb_000673_020 Hb_013405_140--Hb_007037_020 Hb_011021_040 Hb_011021_040 Hb_013405_140--Hb_011021_040 Hb_002016_080--Hb_011485_020 Hb_000922_040 Hb_000922_040 Hb_002016_080--Hb_000922_040 Hb_002016_080--Hb_000673_020 Hb_000413_280 Hb_000413_280 Hb_002016_080--Hb_000413_280 Hb_007037_020--Hb_011021_040 Hb_001172_120 Hb_001172_120 Hb_007037_020--Hb_001172_120 Hb_013399_050 Hb_013399_050 Hb_007037_020--Hb_013399_050 Hb_007037_020--Hb_002016_080 Hb_007037_020--Hb_011485_020 Hb_003880_030 Hb_003880_030 Hb_000673_020--Hb_003880_030 Hb_000175_030 Hb_000175_030 Hb_000673_020--Hb_000175_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_000934_190 Hb_000934_190 Hb_000673_020--Hb_000934_190 Hb_001519_030 Hb_001519_030 Hb_001481_140--Hb_001519_030 Hb_001005_080 Hb_001005_080 Hb_001481_140--Hb_001005_080 Hb_000417_260 Hb_000417_260 Hb_001481_140--Hb_000417_260 Hb_001481_140--Hb_003462_120 Hb_004672_010 Hb_004672_010 Hb_001481_140--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_001481_140--Hb_001008_090 Hb_005137_060 Hb_005137_060 Hb_003462_120--Hb_005137_060 Hb_003462_120--Hb_004672_010 Hb_003462_120--Hb_000175_030 Hb_003462_120--Hb_000934_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.3666 52.1547 44.1326 65.3731 35.9496 31.7976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.268 203.723 175.836 98.7506 55.5509

CAGE analysis