Hb_001008_090

Information

Type -
Description -
Location Contig1008: 84465-97642
Sequence    

Annotation

kegg
ID rcu:RCOM_0897910
description cytochrome C oxidase, putative
nr
ID XP_002517575.1
description cytochrome C oxidase, putative [Ricinus communis]
swissprot
ID Q9SSB8
description Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana GN=COX5B-2 PE=2 SV=1
trembl
ID B9RV06
description Cytochrome C oxidase, putative OS=Ricinus communis GN=RCOM_0897910 PE=4 SV=1
Gene Ontology
ID GO:0005740
description cytochrome c oxidase subunit 5b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00480: 84736-97551 , PASA_asmbl_00481: 94287-97460 , PASA_asmbl_00482: 93893-94253
cDNA
(Sanger)
(ID:Location)		 018_P14.ab1: 85005-97551 , 031_M17.ab1: 84914-97552

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_090 0.0 - - cytochrome C oxidase, putative [Ricinus communis]
2 Hb_005278_040 0.073763881 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
3 Hb_000417_260 0.0749510162 - - protein with unknown function [Ricinus communis]
4 Hb_004659_060 0.0770520222 - - RAS-related GTP-binding family protein [Populus trichocarpa]
5 Hb_006569_100 0.0774611074 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
6 Hb_000300_220 0.0774660443 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
7 Hb_183961_010 0.0858656198 - - PREDICTED: inactive rhomboid protein 1 [Cucumis sativus]
8 Hb_001481_140 0.0865618373 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
9 Hb_001519_030 0.0874471653 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
10 Hb_020419_020 0.0899462473 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_000817_030 0.0937090015 - - mak, putative [Ricinus communis]
12 Hb_068056_030 0.0956118564 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
13 Hb_005527_040 0.0959934211 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
14 Hb_114310_080 0.0998922772 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001005_080 0.0999757579 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
16 Hb_000122_020 0.1005304579 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
17 Hb_027625_010 0.1030901227 - - PREDICTED: protein sym-1-like [Jatropha curcas]
18 Hb_001314_040 0.1076281062 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
19 Hb_002742_090 0.1087768513 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
20 Hb_004449_200 0.109692648 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_001008_090 Hb_001008_090 Hb_005278_040 Hb_005278_040 Hb_001008_090--Hb_005278_040 Hb_000417_260 Hb_000417_260 Hb_001008_090--Hb_000417_260 Hb_004659_060 Hb_004659_060 Hb_001008_090--Hb_004659_060 Hb_006569_100 Hb_006569_100 Hb_001008_090--Hb_006569_100 Hb_000300_220 Hb_000300_220 Hb_001008_090--Hb_000300_220 Hb_183961_010 Hb_183961_010 Hb_001008_090--Hb_183961_010 Hb_005278_040--Hb_000417_260 Hb_002324_010 Hb_002324_010 Hb_005278_040--Hb_002324_010 Hb_000384_120 Hb_000384_120 Hb_005278_040--Hb_000384_120 Hb_000056_250 Hb_000056_250 Hb_005278_040--Hb_000056_250 Hb_138585_040 Hb_138585_040 Hb_005278_040--Hb_138585_040 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_000417_260--Hb_000384_120 Hb_004672_010 Hb_004672_010 Hb_000417_260--Hb_004672_010 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140 Hb_004659_060--Hb_000417_260 Hb_000122_020 Hb_000122_020 Hb_004659_060--Hb_000122_020 Hb_114310_080 Hb_114310_080 Hb_004659_060--Hb_114310_080 Hb_004449_200 Hb_004449_200 Hb_004659_060--Hb_004449_200 Hb_012490_050 Hb_012490_050 Hb_004659_060--Hb_012490_050 Hb_001314_040 Hb_001314_040 Hb_006569_100--Hb_001314_040 Hb_020419_020 Hb_020419_020 Hb_006569_100--Hb_020419_020 Hb_068056_030 Hb_068056_030 Hb_006569_100--Hb_068056_030 Hb_001519_030 Hb_001519_030 Hb_006569_100--Hb_001519_030 Hb_000069_550 Hb_000069_550 Hb_006569_100--Hb_000069_550 Hb_000322_140 Hb_000322_140 Hb_000300_220--Hb_000322_140 Hb_011537_110 Hb_011537_110 Hb_000300_220--Hb_011537_110 Hb_000300_220--Hb_068056_030 Hb_011457_090 Hb_011457_090 Hb_000300_220--Hb_011457_090 Hb_000300_220--Hb_183961_010 Hb_183961_010--Hb_005278_040 Hb_183961_010--Hb_011457_090 Hb_183961_010--Hb_011537_110 Hb_183961_010--Hb_004659_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3249 3.15578 8.36819 26.7 6.93192 17.6338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3221 56.0033 55.2794 19.3448 11.8359

CAGE analysis