Hb_000122_020

Information

Type -
Description -
Location Contig122: 9974-16420
Sequence    

Annotation

kegg
ID rcu:RCOM_0688690
description alpha-soluble nsf attachment protein, putative
nr
ID XP_012091205.1
description PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
swissprot
ID P93798
description Alpha-soluble NSF attachment protein OS=Vitis vinifera PE=2 SV=1
trembl
ID A0A067JQA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03365 PE=4 SV=1
Gene Ontology
ID GO:0005515
description alpha-soluble nsf attachment

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06652: 9966-16477 , PASA_asmbl_06653: 13141-13367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_020 0.0 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
2 Hb_004449_200 0.0505064159 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
3 Hb_002631_020 0.0649779343 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
4 Hb_001307_090 0.0734255114 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
5 Hb_003018_050 0.080517987 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
6 Hb_001461_010 0.0848503783 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
7 Hb_004659_060 0.0848618526 - - RAS-related GTP-binding family protein [Populus trichocarpa]
8 Hb_124755_010 0.0859329204 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
9 Hb_001191_090 0.0864664884 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
10 Hb_006452_040 0.0873462114 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
11 Hb_005463_140 0.0902114062 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
12 Hb_000024_030 0.0902648141 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
13 Hb_000975_110 0.0912517874 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
14 Hb_001054_100 0.0923960623 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
15 Hb_005527_040 0.0938448196 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
16 Hb_000364_030 0.094447395 - - RNA binding protein, putative [Ricinus communis]
17 Hb_007012_060 0.0958757094 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
18 Hb_002374_390 0.0964620453 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
19 Hb_004374_140 0.0969031484 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
20 Hb_006569_100 0.0972935272 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]

Gene co-expression network

sample Hb_000122_020 Hb_000122_020 Hb_004449_200 Hb_004449_200 Hb_000122_020--Hb_004449_200 Hb_002631_020 Hb_002631_020 Hb_000122_020--Hb_002631_020 Hb_001307_090 Hb_001307_090 Hb_000122_020--Hb_001307_090 Hb_003018_050 Hb_003018_050 Hb_000122_020--Hb_003018_050 Hb_001461_010 Hb_001461_010 Hb_000122_020--Hb_001461_010 Hb_004659_060 Hb_004659_060 Hb_000122_020--Hb_004659_060 Hb_004449_200--Hb_002631_020 Hb_007926_060 Hb_007926_060 Hb_004449_200--Hb_007926_060 Hb_001191_090 Hb_001191_090 Hb_004449_200--Hb_001191_090 Hb_000364_030 Hb_000364_030 Hb_004449_200--Hb_000364_030 Hb_004449_200--Hb_001461_010 Hb_002631_020--Hb_003018_050 Hb_006452_040 Hb_006452_040 Hb_002631_020--Hb_006452_040 Hb_004374_140 Hb_004374_140 Hb_002631_020--Hb_004374_140 Hb_002631_020--Hb_001191_090 Hb_004336_050 Hb_004336_050 Hb_001307_090--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_001307_090--Hb_000975_110 Hb_124755_010 Hb_124755_010 Hb_001307_090--Hb_124755_010 Hb_000024_030 Hb_000024_030 Hb_001307_090--Hb_000024_030 Hb_001307_090--Hb_004449_200 Hb_003018_050--Hb_006452_040 Hb_004125_110 Hb_004125_110 Hb_003018_050--Hb_004125_110 Hb_001158_150 Hb_001158_150 Hb_003018_050--Hb_001158_150 Hb_130235_010 Hb_130235_010 Hb_003018_050--Hb_130235_010 Hb_001461_010--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_001461_010--Hb_008544_010 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_001008_090 Hb_001008_090 Hb_004659_060--Hb_001008_090 Hb_000417_260 Hb_000417_260 Hb_004659_060--Hb_000417_260 Hb_114310_080 Hb_114310_080 Hb_004659_060--Hb_114310_080 Hb_004659_060--Hb_004449_200 Hb_012490_050 Hb_012490_050 Hb_004659_060--Hb_012490_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9436 9.57221 22.7364 60.3974 28.2363 49.7417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.467 125.661 89.6897 47.8857 17.5134

CAGE analysis