Hb_006452_040

Information

Type -
Description -
Location Contig6452: 19511-24486
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04450g
description POPTRDRAFT_816104; Signal recognition particle 9 kDa family protein
nr
ID XP_012092093.1
description PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
swissprot
ID Q9SMU7
description Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=SRP9 PE=3 SV=1
trembl
ID B9GS60
description Signal recognition particle 9 kDa protein OS=Populus trichocarpa GN=POPTR_0002s04450g PE=3 SV=2
Gene Ontology
ID GO:0005786
description signal recognition particle 9 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52293: 19597-24458 , PASA_asmbl_52294: 22319-22898 , PASA_asmbl_52295: 20259-20493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_040 0.0 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
2 Hb_003018_050 0.0615870134 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
3 Hb_002631_020 0.0639121916 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
4 Hb_001155_040 0.0641400667 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
5 Hb_007317_160 0.0700071307 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
6 Hb_001221_310 0.0745451896 - - sec61 gamma subunit, putative [Ricinus communis]
7 Hb_005463_140 0.0841057376 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
8 Hb_001882_070 0.0867152994 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
9 Hb_000122_020 0.0873462114 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
10 Hb_004449_200 0.0890758207 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
11 Hb_000441_190 0.0912964457 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
12 Hb_000087_130 0.0921692064 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
13 Hb_006915_040 0.0932004069 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
14 Hb_000312_090 0.0934049328 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
15 Hb_000363_320 0.0943941484 - - PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
16 Hb_002431_050 0.0959822385 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
17 Hb_003053_030 0.0972573266 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
18 Hb_000699_160 0.0972903434 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
19 Hb_005045_070 0.0976795756 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
20 Hb_000042_200 0.0981206069 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_006452_040 Hb_006452_040 Hb_003018_050 Hb_003018_050 Hb_006452_040--Hb_003018_050 Hb_002631_020 Hb_002631_020 Hb_006452_040--Hb_002631_020 Hb_001155_040 Hb_001155_040 Hb_006452_040--Hb_001155_040 Hb_007317_160 Hb_007317_160 Hb_006452_040--Hb_007317_160 Hb_001221_310 Hb_001221_310 Hb_006452_040--Hb_001221_310 Hb_005463_140 Hb_005463_140 Hb_006452_040--Hb_005463_140 Hb_003018_050--Hb_002631_020 Hb_004125_110 Hb_004125_110 Hb_003018_050--Hb_004125_110 Hb_001158_150 Hb_001158_150 Hb_003018_050--Hb_001158_150 Hb_130235_010 Hb_130235_010 Hb_003018_050--Hb_130235_010 Hb_000122_020 Hb_000122_020 Hb_003018_050--Hb_000122_020 Hb_004449_200 Hb_004449_200 Hb_002631_020--Hb_004449_200 Hb_002631_020--Hb_000122_020 Hb_004374_140 Hb_004374_140 Hb_002631_020--Hb_004374_140 Hb_001191_090 Hb_001191_090 Hb_002631_020--Hb_001191_090 Hb_000087_130 Hb_000087_130 Hb_001155_040--Hb_000087_130 Hb_001155_040--Hb_005463_140 Hb_000062_390 Hb_000062_390 Hb_001155_040--Hb_000062_390 Hb_001155_040--Hb_007317_160 Hb_000389_080 Hb_000389_080 Hb_001155_040--Hb_000389_080 Hb_007317_160--Hb_005463_140 Hb_012539_020 Hb_012539_020 Hb_007317_160--Hb_012539_020 Hb_000012_100 Hb_000012_100 Hb_007317_160--Hb_000012_100 Hb_005663_120 Hb_005663_120 Hb_007317_160--Hb_005663_120 Hb_000312_090 Hb_000312_090 Hb_001221_310--Hb_000312_090 Hb_000699_160 Hb_000699_160 Hb_001221_310--Hb_000699_160 Hb_000617_090 Hb_000617_090 Hb_001221_310--Hb_000617_090 Hb_010672_060 Hb_010672_060 Hb_001221_310--Hb_010672_060 Hb_001221_310--Hb_001155_040 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_000224_140 Hb_000224_140 Hb_005463_140--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_005463_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5299 4.53583 12.5903 38.3375 15.219 23.0075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.6091 93.722 43.9396 17.2507 12.0497

CAGE analysis