Hb_000312_090

Information

Type -
Description -
Location Contig312: 214961-222004
Sequence    

Annotation

kegg
ID cic:CICLE_v10017328mg
description hypothetical protein
nr
ID XP_012086338.1
description PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID V4UES4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017328mg PE=4 SV=1
Gene Ontology
ID GO:0016301
description PREDICTED: uncharacterized protein LOC104800987

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32986: 214942-221950 , PASA_asmbl_32987: 218970-219244
cDNA
(Sanger)
(ID:Location)		 006_L08.ab1: 214942-221948

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000312_090 0.0 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
2 Hb_000617_090 0.0526165981 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
3 Hb_001221_310 0.0547054415 - - sec61 gamma subunit, putative [Ricinus communis]
4 Hb_009851_100 0.061754984 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
5 Hb_003125_150 0.0646310305 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
6 Hb_001045_080 0.066210083 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
7 Hb_002835_320 0.071541106 - - 60S ribosomal protein L27B [Hevea brasiliensis]
8 Hb_002431_050 0.0769115441 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
9 Hb_001269_270 0.0774174648 - - 60S ribosomal protein L27B [Hevea brasiliensis]
10 Hb_002571_020 0.081549785 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
11 Hb_010672_060 0.0823571163 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
12 Hb_007416_020 0.0835551064 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
13 Hb_003226_210 0.0843344471 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
14 Hb_000699_160 0.0868302706 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
15 Hb_000820_130 0.0880222066 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
16 Hb_026398_010 0.0888566792 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
17 Hb_000484_020 0.0889144391 - - hypothetical protein CISIN_1g030884mg [Citrus sinensis]
18 Hb_002897_080 0.0896733399 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
19 Hb_001638_260 0.0913945208 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
20 Hb_001687_040 0.0925825178 - - actin-depolymerizing factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_000312_090 Hb_000312_090 Hb_000617_090 Hb_000617_090 Hb_000312_090--Hb_000617_090 Hb_001221_310 Hb_001221_310 Hb_000312_090--Hb_001221_310 Hb_009851_100 Hb_009851_100 Hb_000312_090--Hb_009851_100 Hb_003125_150 Hb_003125_150 Hb_000312_090--Hb_003125_150 Hb_001045_080 Hb_001045_080 Hb_000312_090--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_000312_090--Hb_002835_320 Hb_001269_270 Hb_001269_270 Hb_000617_090--Hb_001269_270 Hb_003226_210 Hb_003226_210 Hb_000617_090--Hb_003226_210 Hb_026398_010 Hb_026398_010 Hb_000617_090--Hb_026398_010 Hb_000617_090--Hb_001221_310 Hb_000617_090--Hb_003125_150 Hb_000699_160 Hb_000699_160 Hb_001221_310--Hb_000699_160 Hb_006452_040 Hb_006452_040 Hb_001221_310--Hb_006452_040 Hb_010672_060 Hb_010672_060 Hb_001221_310--Hb_010672_060 Hb_001155_040 Hb_001155_040 Hb_001221_310--Hb_001155_040 Hb_002571_020 Hb_002571_020 Hb_009851_100--Hb_002571_020 Hb_009851_100--Hb_001045_080 Hb_009851_100--Hb_002835_320 Hb_000526_150 Hb_000526_150 Hb_009851_100--Hb_000526_150 Hb_009851_100--Hb_001269_270 Hb_003125_150--Hb_001269_270 Hb_003125_150--Hb_001045_080 Hb_003125_150--Hb_009851_100 Hb_007479_020 Hb_007479_020 Hb_003125_150--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_003125_150--Hb_000120_750 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_001045_080--Hb_001269_270 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260 Hb_000163_130 Hb_000163_130 Hb_002835_320--Hb_000163_130 Hb_148930_010 Hb_148930_010 Hb_002835_320--Hb_148930_010 Hb_003053_030 Hb_003053_030 Hb_002835_320--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_002835_320--Hb_001433_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0916 1.93598 5.22519 9.61828 7.02808 10.4975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1812 37.1854 12.5471 6.30214 3.47806

CAGE analysis