Hb_003053_030

Information

Type -
Description -
Location Contig3053: 31307-38012
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21630g
description hypothetical protein
nr
ID XP_012081459.1
description PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
swissprot
ID Q29RZ5
description Transport and Golgi organization protein 2 homolog OS=Bos taurus GN=TANGO2 PE=2 SV=1
trembl
ID A0A067LLS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09583 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32207: 31158-31447 , PASA_asmbl_32208: 31562-37923 , PASA_asmbl_32209: 32577-32881 , PASA_asmbl_32210: 33040-33296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003053_030 0.0 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
2 Hb_001191_090 0.0540118676 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
3 Hb_000181_300 0.0559853715 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
4 Hb_148200_010 0.0574876352 - - hypothetical protein 33 [Hevea brasiliensis]
5 Hb_000364_030 0.0658478155 - - RNA binding protein, putative [Ricinus communis]
6 Hb_004156_040 0.0665597337 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
7 Hb_003994_040 0.0676294067 - - -
8 Hb_001279_360 0.0681853257 - - protein with unknown function [Ricinus communis]
9 Hb_017948_010 0.0685143823 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
10 Hb_002097_060 0.0686884771 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_000173_220 0.0686920088 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
12 Hb_002835_320 0.0695974126 - - 60S ribosomal protein L27B [Hevea brasiliensis]
13 Hb_007304_070 0.0701335212 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
14 Hb_000163_130 0.0711878081 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
15 Hb_002107_120 0.0734880344 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
16 Hb_000224_090 0.0742449353 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
17 Hb_000012_100 0.0744925256 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
18 Hb_002431_050 0.0756622354 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
19 Hb_006573_220 0.0766698517 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
20 Hb_003455_040 0.0784176977 - - hypothetical protein JCGZ_17270 [Jatropha curcas]

Gene co-expression network

sample Hb_003053_030 Hb_003053_030 Hb_001191_090 Hb_001191_090 Hb_003053_030--Hb_001191_090 Hb_000181_300 Hb_000181_300 Hb_003053_030--Hb_000181_300 Hb_148200_010 Hb_148200_010 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_001191_090--Hb_148200_010 Hb_006573_220 Hb_006573_220 Hb_001191_090--Hb_006573_220 Hb_001191_090--Hb_000181_300 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030 Hb_000193_120 Hb_000193_120 Hb_000181_300--Hb_000193_120 Hb_000012_100 Hb_000012_100 Hb_000181_300--Hb_000012_100 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010 Hb_148200_010--Hb_003376_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_000364_030--Hb_002374_390 Hb_000364_030--Hb_000181_300 Hb_000364_030--Hb_001191_090 Hb_000364_030--Hb_148200_010 Hb_011644_030 Hb_011644_030 Hb_000364_030--Hb_011644_030 Hb_004156_040--Hb_000193_120 Hb_004156_040--Hb_000012_100 Hb_004156_040--Hb_001191_090 Hb_004156_040--Hb_000181_300 Hb_003455_040 Hb_003455_040 Hb_003994_040--Hb_003455_040 Hb_017948_010 Hb_017948_010 Hb_003994_040--Hb_017948_010 Hb_005474_060 Hb_005474_060 Hb_003994_040--Hb_005474_060 Hb_003994_040--Hb_000173_220 Hb_003994_040--Hb_011644_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1666 7.62543 11.1418 21.4633 17.9425 28.8576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.6524 97.6011 54.2929 23.3679 16.5925

CAGE analysis