Hb_017948_010

Information

Type -
Description -
Location Contig17948: 7017-9102
Sequence    

Annotation

kegg
ID rcu:RCOM_0813240
description thioredoxin m(mitochondrial)-type, putative
nr
ID AEC03325.1
description mitochondrial thioredoxin 2 [Hevea brasiliensis]
swissprot
ID Q9SEU7
description Thioredoxin M3, chloroplastic OS=Arabidopsis thaliana GN=GAT1 PE=2 SV=2
trembl
ID I1SSJ6
description Mitochondrial thioredoxin 2 OS=Hevea brasiliensis GN=TrxM2 PE=2 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17346: 7030-9426 , PASA_asmbl_17347: 8215-8858
cDNA
(Sanger)
(ID:Location)		 013_I17.ab1: 7114-9252 , 023_J13.ab1: 8215-8858

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017948_010 0.0 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
2 Hb_000173_220 0.0545823681 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
3 Hb_003994_040 0.0592331435 - - -
4 Hb_153112_030 0.0593894607 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]
5 Hb_001279_360 0.0666777862 - - protein with unknown function [Ricinus communis]
6 Hb_001083_020 0.0683799914 - - -
7 Hb_003053_030 0.0685143823 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
8 Hb_001191_090 0.0715591503 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
9 Hb_012753_160 0.0721670796 - - ara4-interacting protein, putative [Ricinus communis]
10 Hb_012675_060 0.0727876661 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
11 Hb_000181_300 0.0736472186 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
12 Hb_148200_010 0.0747775936 - - hypothetical protein 33 [Hevea brasiliensis]
13 Hb_003455_040 0.0753214271 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
14 Hb_002027_210 0.0771726349 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
15 Hb_001085_120 0.0777818761 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
16 Hb_000680_140 0.080202349 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
17 Hb_000817_030 0.0805863661 - - mak, putative [Ricinus communis]
18 Hb_001076_020 0.080987965 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
19 Hb_000193_120 0.0829716381 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
20 Hb_003376_030 0.0848223288 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_017948_010 Hb_017948_010 Hb_000173_220 Hb_000173_220 Hb_017948_010--Hb_000173_220 Hb_003994_040 Hb_003994_040 Hb_017948_010--Hb_003994_040 Hb_153112_030 Hb_153112_030 Hb_017948_010--Hb_153112_030 Hb_001279_360 Hb_001279_360 Hb_017948_010--Hb_001279_360 Hb_001083_020 Hb_001083_020 Hb_017948_010--Hb_001083_020 Hb_003053_030 Hb_003053_030 Hb_017948_010--Hb_003053_030 Hb_002027_210 Hb_002027_210 Hb_000173_220--Hb_002027_210 Hb_001191_090 Hb_001191_090 Hb_000173_220--Hb_001191_090 Hb_003455_040 Hb_003455_040 Hb_000173_220--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_000173_220--Hb_000574_480 Hb_012675_060 Hb_012675_060 Hb_000173_220--Hb_012675_060 Hb_003994_040--Hb_003455_040 Hb_003994_040--Hb_003053_030 Hb_005474_060 Hb_005474_060 Hb_003994_040--Hb_005474_060 Hb_003994_040--Hb_000173_220 Hb_011644_030 Hb_011644_030 Hb_003994_040--Hb_011644_030 Hb_000680_140 Hb_000680_140 Hb_153112_030--Hb_000680_140 Hb_001633_030 Hb_001633_030 Hb_153112_030--Hb_001633_030 Hb_153112_030--Hb_000173_220 Hb_004459_040 Hb_004459_040 Hb_153112_030--Hb_004459_040 Hb_000181_300 Hb_000181_300 Hb_153112_030--Hb_000181_300 Hb_148200_010 Hb_148200_010 Hb_001279_360--Hb_148200_010 Hb_001279_360--Hb_003053_030 Hb_005181_030 Hb_005181_030 Hb_001279_360--Hb_005181_030 Hb_156947_010 Hb_156947_010 Hb_001279_360--Hb_156947_010 Hb_001433_050 Hb_001433_050 Hb_001279_360--Hb_001433_050 Hb_001775_110 Hb_001775_110 Hb_001083_020--Hb_001775_110 Hb_000230_510 Hb_000230_510 Hb_001083_020--Hb_000230_510 Hb_001083_020--Hb_012675_060 Hb_001360_050 Hb_001360_050 Hb_001083_020--Hb_001360_050 Hb_009393_210 Hb_009393_210 Hb_001083_020--Hb_009393_210 Hb_003053_030--Hb_001191_090 Hb_003053_030--Hb_000181_300 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4283 7.0653 9.40408 14.1839 16.0243 18.8044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.0509 69.6939 44.7418 18.0819 18.1043

CAGE analysis