Hb_004459_040

Information

Type -
Description -
Location Contig4459: 35514-37619
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07560g
description POPTRDRAFT_728220; hypothetical protein
nr
ID XP_012091747.1
description PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JM48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21546 PE=4 SV=1
Gene Ontology
ID GO:0005773
description 3r-hydroxymyristoyl- dehydratase-hydroxymyristoyl acp dehydrase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43000: 35567-37610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004459_040 0.0 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
2 Hb_033153_060 0.0551024328 - - Transcription elongation factor, putative [Ricinus communis]
3 Hb_007576_170 0.0581581217 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000680_140 0.0633263594 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
5 Hb_006541_010 0.0637802448 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
6 Hb_002687_170 0.0653900702 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
7 Hb_000224_140 0.0697978758 - - ribonuclease z, chloroplast, putative [Ricinus communis]
8 Hb_005181_030 0.0700603284 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
9 Hb_000840_180 0.0721684748 - - protein BOLA2 [Jatropha curcas]
10 Hb_002798_020 0.0728657352 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
11 Hb_000265_050 0.074322056 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
12 Hb_001512_080 0.0753516582 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
13 Hb_002431_050 0.0757321223 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
14 Hb_000996_140 0.0779414799 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
15 Hb_002843_140 0.0786326092 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
16 Hb_004846_090 0.081116576 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
17 Hb_174865_010 0.0813967096 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
18 Hb_007416_020 0.0814957287 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
19 Hb_001616_040 0.081699776 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
20 Hb_153112_030 0.0818310557 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]

Gene co-expression network

sample Hb_004459_040 Hb_004459_040 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_007576_170 Hb_007576_170 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_006541_010 Hb_006541_010 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_033153_060--Hb_006541_010 Hb_033153_060--Hb_007576_170 Hb_000042_200 Hb_000042_200 Hb_033153_060--Hb_000042_200 Hb_007065_010 Hb_007065_010 Hb_033153_060--Hb_007065_010 Hb_000789_230 Hb_000789_230 Hb_033153_060--Hb_000789_230 Hb_000431_070 Hb_000431_070 Hb_007576_170--Hb_000431_070 Hb_002798_020 Hb_002798_020 Hb_007576_170--Hb_002798_020 Hb_007576_170--Hb_006541_010 Hb_017225_020 Hb_017225_020 Hb_007576_170--Hb_017225_020 Hb_153112_030 Hb_153112_030 Hb_000680_140--Hb_153112_030 Hb_000680_140--Hb_007576_170 Hb_000680_140--Hb_006541_010 Hb_001616_040 Hb_001616_040 Hb_000680_140--Hb_001616_040 Hb_000668_040 Hb_000668_040 Hb_000680_140--Hb_000668_040 Hb_006541_010--Hb_001616_040 Hb_011644_030 Hb_011644_030 Hb_006541_010--Hb_011644_030 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_001158_230 Hb_001158_230 Hb_002687_170--Hb_001158_230 Hb_005181_030 Hb_005181_030 Hb_002687_170--Hb_005181_030 Hb_005474_060 Hb_005474_060 Hb_002687_170--Hb_005474_060 Hb_009421_040 Hb_009421_040 Hb_002687_170--Hb_009421_040 Hb_003994_040 Hb_003994_040 Hb_002687_170--Hb_003994_040 Hb_068056_030 Hb_068056_030 Hb_000224_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_000224_140--Hb_001512_080 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_003349_080 Hb_003349_080 Hb_000224_140--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_000224_140--Hb_000318_160 Hb_005463_140 Hb_005463_140 Hb_000224_140--Hb_005463_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7814 7.4392 17.2153 20.8107 14.3588 21.0933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.1941 74.0083 33.4482 15.3953 21.3778

CAGE analysis