Hb_000668_040

Information

Type -
Description -
Location Contig668: 31305-36968
Sequence    

Annotation

kegg
ID rcu:RCOM_1034270
description transporter, putative
nr
ID XP_012092744.1
description PREDICTED: random slug protein 5-like [Jatropha curcas]
swissprot
ID Q55CU8
description Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1
trembl
ID A0A067JBY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09855 PE=4 SV=1
Gene Ontology
ID GO:0005622
description random slug protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53297: 31476-36860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_040 0.0 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
2 Hb_000201_120 0.0748071285 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
3 Hb_001832_010 0.0767141436 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
4 Hb_000680_140 0.0775873382 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
5 Hb_001396_100 0.079854751 - - DNA binding protein, putative [Ricinus communis]
6 Hb_002016_100 0.0825369018 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
7 Hb_010080_090 0.0848215433 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
8 Hb_001616_040 0.0870307712 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
9 Hb_000123_170 0.087065243 - - Rab3 [Hevea brasiliensis]
10 Hb_000373_120 0.0882113384 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
11 Hb_143766_010 0.089173293 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
12 Hb_004102_070 0.089571666 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
13 Hb_000340_570 0.0915776171 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
14 Hb_001218_040 0.093520619 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
15 Hb_000331_080 0.093548006 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
16 Hb_000025_120 0.0939566152 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
17 Hb_017225_020 0.0943970996 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
18 Hb_001191_090 0.0961493586 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
19 Hb_020400_050 0.0970499241 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
20 Hb_004724_340 0.0975316853 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]

Gene co-expression network

sample Hb_000668_040 Hb_000668_040 Hb_000201_120 Hb_000201_120 Hb_000668_040--Hb_000201_120 Hb_001832_010 Hb_001832_010 Hb_000668_040--Hb_001832_010 Hb_000680_140 Hb_000680_140 Hb_000668_040--Hb_000680_140 Hb_001396_100 Hb_001396_100 Hb_000668_040--Hb_001396_100 Hb_002016_100 Hb_002016_100 Hb_000668_040--Hb_002016_100 Hb_010080_090 Hb_010080_090 Hb_000668_040--Hb_010080_090 Hb_003581_150 Hb_003581_150 Hb_000201_120--Hb_003581_150 Hb_002830_020 Hb_002830_020 Hb_000201_120--Hb_002830_020 Hb_001016_030 Hb_001016_030 Hb_000201_120--Hb_001016_030 Hb_001616_040 Hb_001616_040 Hb_000201_120--Hb_001616_040 Hb_000840_030 Hb_000840_030 Hb_000201_120--Hb_000840_030 Hb_000574_480 Hb_000574_480 Hb_000201_120--Hb_000574_480 Hb_001833_110 Hb_001833_110 Hb_001832_010--Hb_001833_110 Hb_015807_040 Hb_015807_040 Hb_001832_010--Hb_015807_040 Hb_004724_340 Hb_004724_340 Hb_001832_010--Hb_004724_340 Hb_001360_050 Hb_001360_050 Hb_001832_010--Hb_001360_050 Hb_004837_140 Hb_004837_140 Hb_001832_010--Hb_004837_140 Hb_004459_040 Hb_004459_040 Hb_000680_140--Hb_004459_040 Hb_153112_030 Hb_153112_030 Hb_000680_140--Hb_153112_030 Hb_007576_170 Hb_007576_170 Hb_000680_140--Hb_007576_170 Hb_006541_010 Hb_006541_010 Hb_000680_140--Hb_006541_010 Hb_000680_140--Hb_001616_040 Hb_001904_090 Hb_001904_090 Hb_001396_100--Hb_001904_090 Hb_001191_090 Hb_001191_090 Hb_001396_100--Hb_001191_090 Hb_029866_020 Hb_029866_020 Hb_001396_100--Hb_029866_020 Hb_000240_090 Hb_000240_090 Hb_001396_100--Hb_000240_090 Hb_000181_300 Hb_000181_300 Hb_001396_100--Hb_000181_300 Hb_006831_120 Hb_006831_120 Hb_001396_100--Hb_006831_120 Hb_000025_120 Hb_000025_120 Hb_002016_100--Hb_000025_120 Hb_020400_050 Hb_020400_050 Hb_002016_100--Hb_020400_050 Hb_002016_100--Hb_001833_110 Hb_001105_070 Hb_001105_070 Hb_002016_100--Hb_001105_070 Hb_000496_060 Hb_000496_060 Hb_002016_100--Hb_000496_060 Hb_012675_060 Hb_012675_060 Hb_010080_090--Hb_012675_060 Hb_000834_270 Hb_000834_270 Hb_010080_090--Hb_000834_270 Hb_010080_090--Hb_004724_340 Hb_002963_010 Hb_002963_010 Hb_010080_090--Hb_002963_010 Hb_004586_320 Hb_004586_320 Hb_010080_090--Hb_004586_320 Hb_010080_090--Hb_001360_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1671 7.65382 14.271 14.8648 16.5526 16.6236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.1838 42.438 30.7754 17.3716 16.6363

CAGE analysis