Hb_004586_320

Information

Type -
Description -
Location Contig4586: 358773-361388
Sequence    

Annotation

kegg
ID tcc:TCM_034457
description Target SNARE coiled-coil domain protein
nr
ID XP_012067949.1
description PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
swissprot
ID Q8VXX9
description Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1
trembl
ID A0A067KZ44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15854 PE=4 SV=1
Gene Ontology
ID GO:0000139
description bet1-like protein at4g14600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43567: 359506-359787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_320 0.0 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
2 Hb_012675_060 0.0569662945 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
3 Hb_003656_070 0.0637307726 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
4 Hb_007943_090 0.0669246906 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
5 Hb_001998_050 0.0678163773 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
6 Hb_000574_480 0.0683896383 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
7 Hb_148200_010 0.0695395918 - - hypothetical protein 33 [Hevea brasiliensis]
8 Hb_000347_410 0.0710695617 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
9 Hb_012753_160 0.0732123063 - - ara4-interacting protein, putative [Ricinus communis]
10 Hb_000834_270 0.0742642985 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
11 Hb_010080_090 0.0742729938 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
12 Hb_003376_030 0.074308459 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
13 Hb_000671_090 0.0751396429 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
14 Hb_004375_140 0.0759137941 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
15 Hb_000146_020 0.0776770049 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
16 Hb_000103_010 0.0818079876 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
17 Hb_007479_020 0.0818262687 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
18 Hb_008173_090 0.0820836742 - - glutathione peroxidase, putative [Ricinus communis]
19 Hb_000175_060 0.0823590159 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
20 Hb_000240_090 0.0831151068 - - Rab5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004586_320 Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_004586_320--Hb_012675_060 Hb_003656_070 Hb_003656_070 Hb_004586_320--Hb_003656_070 Hb_007943_090 Hb_007943_090 Hb_004586_320--Hb_007943_090 Hb_001998_050 Hb_001998_050 Hb_004586_320--Hb_001998_050 Hb_000574_480 Hb_000574_480 Hb_004586_320--Hb_000574_480 Hb_148200_010 Hb_148200_010 Hb_004586_320--Hb_148200_010 Hb_012753_160 Hb_012753_160 Hb_012675_060--Hb_012753_160 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_000834_270 Hb_000834_270 Hb_012675_060--Hb_000834_270 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220 Hb_008173_090 Hb_008173_090 Hb_003656_070--Hb_008173_090 Hb_001047_230 Hb_001047_230 Hb_003656_070--Hb_001047_230 Hb_003656_070--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_000009_160 Hb_000009_160 Hb_007943_090--Hb_000009_160 Hb_000146_020 Hb_000146_020 Hb_007943_090--Hb_000146_020 Hb_008289_060 Hb_008289_060 Hb_007943_090--Hb_008289_060 Hb_007943_090--Hb_001998_050 Hb_003376_030 Hb_003376_030 Hb_007943_090--Hb_003376_030 Hb_000227_230 Hb_000227_230 Hb_001998_050--Hb_000227_230 Hb_001998_050--Hb_000574_480 Hb_002925_030 Hb_002925_030 Hb_001998_050--Hb_002925_030 Hb_001998_050--Hb_012753_160 Hb_001998_050--Hb_012675_060 Hb_002963_010 Hb_002963_010 Hb_000574_480--Hb_002963_010 Hb_000574_480--Hb_008173_090 Hb_000574_480--Hb_000173_220 Hb_001191_090 Hb_001191_090 Hb_148200_010--Hb_001191_090 Hb_148200_010--Hb_003376_030 Hb_003053_030 Hb_003053_030 Hb_148200_010--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.6243 16.5136 18.6517 17.6763 29.3882 25.3448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.2086 87.6867 63.2596 31.0568 12.5043

CAGE analysis