Hb_008289_060

Information

Type -
Description -
Location Contig8289: 84357-94806
Sequence    

Annotation

kegg
ID cic:CICLE_v10019993mg
description hypothetical protein
nr
ID XP_012074690.1
description PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q557M8
description General transcription factor IIE subunit 1 OS=Dictyostelium discoideum GN=gtf2e1-1 PE=3 SV=1
trembl
ID A0A067KL60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10470 PE=4 SV=1
Gene Ontology
ID GO:0043565
description general transcription factor iie subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59759: 84286-94732 , PASA_asmbl_59760: 84370-87292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008289_060 0.0 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
2 Hb_000030_100 0.056397388 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
3 Hb_004951_040 0.0565097096 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
4 Hb_055062_030 0.0627894122 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
5 Hb_007943_090 0.0640376679 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
6 Hb_000146_020 0.0649740661 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
7 Hb_002918_200 0.0687804676 - - -
8 Hb_005488_010 0.0706517949 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001109_020 0.0709267998 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008453_090 0.071338217 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
11 Hb_000223_150 0.0731549577 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
12 Hb_021650_030 0.0739163958 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
13 Hb_000834_270 0.0742670032 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
14 Hb_016065_010 0.0748805746 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
15 Hb_000205_270 0.0775016746 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
16 Hb_000671_150 0.0779941423 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
17 Hb_000883_050 0.0789400311 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
18 Hb_007924_020 0.0790417696 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_001616_060 0.0791191356 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
20 Hb_004899_320 0.0803077175 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_008289_060 Hb_008289_060 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_055062_030 Hb_055062_030 Hb_008289_060--Hb_055062_030 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200 Hb_011465_040 Hb_011465_040 Hb_000030_100--Hb_011465_040 Hb_000030_100--Hb_002918_200 Hb_000089_160 Hb_000089_160 Hb_000030_100--Hb_000089_160 Hb_003226_280 Hb_003226_280 Hb_000030_100--Hb_003226_280 Hb_001109_020 Hb_001109_020 Hb_000030_100--Hb_001109_020 Hb_008453_090 Hb_008453_090 Hb_004951_040--Hb_008453_090 Hb_004951_040--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_004951_040--Hb_003018_200 Hb_000223_150 Hb_000223_150 Hb_004951_040--Hb_000223_150 Hb_005333_130 Hb_005333_130 Hb_004951_040--Hb_005333_130 Hb_016065_010 Hb_016065_010 Hb_055062_030--Hb_016065_010 Hb_005488_010 Hb_005488_010 Hb_055062_030--Hb_005488_010 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_000567_260 Hb_000567_260 Hb_055062_030--Hb_000567_260 Hb_055062_030--Hb_008453_090 Hb_000009_160 Hb_000009_160 Hb_007943_090--Hb_000009_160 Hb_007943_090--Hb_000146_020 Hb_004586_320 Hb_004586_320 Hb_007943_090--Hb_004586_320 Hb_001998_050 Hb_001998_050 Hb_007943_090--Hb_001998_050 Hb_003376_030 Hb_003376_030 Hb_007943_090--Hb_003376_030 Hb_000347_410 Hb_000347_410 Hb_000146_020--Hb_000347_410 Hb_000834_270 Hb_000834_270 Hb_000146_020--Hb_000834_270 Hb_000146_020--Hb_003376_030 Hb_002027_210 Hb_002027_210 Hb_000146_020--Hb_002027_210 Hb_004837_140 Hb_004837_140 Hb_002918_200--Hb_004837_140 Hb_004108_230 Hb_004108_230 Hb_002918_200--Hb_004108_230 Hb_002918_200--Hb_000834_270 Hb_003175_040 Hb_003175_040 Hb_002918_200--Hb_003175_040 Hb_000170_010 Hb_000170_010 Hb_002918_200--Hb_000170_010 Hb_002918_200--Hb_002027_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.517 37.7371 22.548 28.5929 81.1309 98.1662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
159.379 195.456 184.751 50.4862 30.8694

CAGE analysis