Hb_005488_010

Information

Type -
Description -
Location Contig5488: 3576-7137
Sequence    

Annotation

kegg
ID rcu:RCOM_1517990
description hypothetical protein
nr
ID XP_002524051.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDI2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1517990 PE=4 SV=1
Gene Ontology
ID GO:0016301
description intracellular protein transport protein uso1 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48103: 3664-7081 , PASA_asmbl_48104: 3664-6165
cDNA
(Sanger)
(ID:Location)		 003_J10.ab1: 3664-6165 , 010_J22.ab1: 3682-5067

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_016065_010 0.0564696247 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
3 Hb_004899_320 0.0569299856 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
4 Hb_055062_030 0.0621154772 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
5 Hb_000205_270 0.064688469 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
6 Hb_000836_070 0.0651008679 - - protein binding protein, putative [Ricinus communis]
7 Hb_008289_060 0.0706517949 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
8 Hb_000223_150 0.071161609 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
9 Hb_131864_040 0.07282867 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
10 Hb_003266_130 0.0739146197 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
11 Hb_003018_190 0.0758162195 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
12 Hb_001158_140 0.0766458281 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
13 Hb_009486_130 0.0769466755 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
14 Hb_000329_310 0.0776244194 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
15 Hb_008453_090 0.0784562317 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
16 Hb_001366_200 0.0810992686 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001109_020 0.0825836377 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000567_260 0.083919143 - - BnaA09g41440D [Brassica napus]
19 Hb_001671_020 0.0853314005 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
20 Hb_005532_060 0.0854888677 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]

Gene co-expression network

sample Hb_005488_010 Hb_005488_010 Hb_016065_010 Hb_016065_010 Hb_005488_010--Hb_016065_010 Hb_004899_320 Hb_004899_320 Hb_005488_010--Hb_004899_320 Hb_055062_030 Hb_055062_030 Hb_005488_010--Hb_055062_030 Hb_000205_270 Hb_000205_270 Hb_005488_010--Hb_000205_270 Hb_000836_070 Hb_000836_070 Hb_005488_010--Hb_000836_070 Hb_008289_060 Hb_008289_060 Hb_005488_010--Hb_008289_060 Hb_016065_010--Hb_000205_270 Hb_008453_090 Hb_008453_090 Hb_016065_010--Hb_008453_090 Hb_016065_010--Hb_055062_030 Hb_009486_130 Hb_009486_130 Hb_016065_010--Hb_009486_130 Hb_000009_160 Hb_000009_160 Hb_016065_010--Hb_000009_160 Hb_004899_320--Hb_000836_070 Hb_006693_030 Hb_006693_030 Hb_004899_320--Hb_006693_030 Hb_001366_200 Hb_001366_200 Hb_004899_320--Hb_001366_200 Hb_000956_010 Hb_000956_010 Hb_004899_320--Hb_000956_010 Hb_000329_040 Hb_000329_040 Hb_004899_320--Hb_000329_040 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_055062_030--Hb_008289_060 Hb_000567_260 Hb_000567_260 Hb_055062_030--Hb_000567_260 Hb_055062_030--Hb_008453_090 Hb_000205_270--Hb_000009_160 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050 Hb_000923_070 Hb_000923_070 Hb_000836_070--Hb_000923_070 Hb_000836_070--Hb_008453_090 Hb_010710_040 Hb_010710_040 Hb_000836_070--Hb_010710_040 Hb_003018_190 Hb_003018_190 Hb_000836_070--Hb_003018_190 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.3688 20.1062 8.84763 16.7689 45.9506 66.9255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.3901 88.9115 92.7758 21.4852 22.7734

CAGE analysis