Hb_000030_100

Information

Type -
Description -
Location Contig30: 68582-76974
Sequence    

Annotation

kegg
ID rcu:RCOM_1121800
description short-chain type dehydrogenase, putative (EC:1.1.1.100)
nr
ID XP_012092689.1
description PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
swissprot
ID Q08632
description Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1
trembl
ID A0A067JJV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06856 PE=4 SV=1
Gene Ontology
ID GO:0004316
description short-chain type dehydrogenase reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31492: 75136-76630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_100 0.0 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
2 Hb_008289_060 0.056397388 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
3 Hb_011465_040 0.0642752911 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
4 Hb_002918_200 0.0696548632 - - -
5 Hb_000089_160 0.0751142001 - - 60S ribosomal protein L5B [Hevea brasiliensis]
6 Hb_003226_280 0.0762972429 - - PREDICTED: peter Pan-like protein [Populus euphratica]
7 Hb_001109_020 0.0768871404 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001691_210 0.080861293 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
9 Hb_001616_060 0.0812564569 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
10 Hb_000329_310 0.0815416756 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
11 Hb_007101_130 0.0819550506 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000671_150 0.0819869588 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
13 Hb_002028_130 0.0819987008 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
14 Hb_007943_090 0.0821740656 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
15 Hb_000170_010 0.0831412895 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_003175_040 0.0838427866 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
17 Hb_000834_270 0.0840573065 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
18 Hb_000239_010 0.0842678123 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_016065_010 0.0852811744 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
20 Hb_005694_080 0.0860913606 - - DNA-directed RNA polymerase III, putative [Ricinus communis]

Gene co-expression network

sample Hb_000030_100 Hb_000030_100 Hb_008289_060 Hb_008289_060 Hb_000030_100--Hb_008289_060 Hb_011465_040 Hb_011465_040 Hb_000030_100--Hb_011465_040 Hb_002918_200 Hb_002918_200 Hb_000030_100--Hb_002918_200 Hb_000089_160 Hb_000089_160 Hb_000030_100--Hb_000089_160 Hb_003226_280 Hb_003226_280 Hb_000030_100--Hb_003226_280 Hb_001109_020 Hb_001109_020 Hb_000030_100--Hb_001109_020 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_055062_030 Hb_055062_030 Hb_008289_060--Hb_055062_030 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_008289_060--Hb_002918_200 Hb_005701_020 Hb_005701_020 Hb_011465_040--Hb_005701_020 Hb_009404_020 Hb_009404_020 Hb_011465_040--Hb_009404_020 Hb_000376_050 Hb_000376_050 Hb_011465_040--Hb_000376_050 Hb_011465_040--Hb_002918_200 Hb_000703_140 Hb_000703_140 Hb_011465_040--Hb_000703_140 Hb_004837_140 Hb_004837_140 Hb_002918_200--Hb_004837_140 Hb_004108_230 Hb_004108_230 Hb_002918_200--Hb_004108_230 Hb_000834_270 Hb_000834_270 Hb_002918_200--Hb_000834_270 Hb_003175_040 Hb_003175_040 Hb_002918_200--Hb_003175_040 Hb_000170_010 Hb_000170_010 Hb_002918_200--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_002918_200--Hb_002027_210 Hb_001691_210 Hb_001691_210 Hb_000089_160--Hb_001691_210 Hb_001718_100 Hb_001718_100 Hb_000089_160--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_000089_160--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_000089_160--Hb_001427_120 Hb_000089_160--Hb_003175_040 Hb_000239_010 Hb_000239_010 Hb_003226_280--Hb_000239_010 Hb_000363_200 Hb_000363_200 Hb_003226_280--Hb_000363_200 Hb_000865_070 Hb_000865_070 Hb_003226_280--Hb_000865_070 Hb_148200_010 Hb_148200_010 Hb_003226_280--Hb_148200_010 Hb_003226_280--Hb_000089_160 Hb_001829_060 Hb_001829_060 Hb_001109_020--Hb_001829_060 Hb_000046_110 Hb_000046_110 Hb_001109_020--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001109_020--Hb_003927_130 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2721 4.66677 2.76317 4.2312 13.5982 17.4493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.0816 34.9562 27.3048 12.0315 5.43376

CAGE analysis