Hb_000239_010

Information

Type -
Description -
Location Contig239: 8228-12841
Sequence    

Annotation

kegg
ID rcu:RCOM_1587390
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002510095.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q5BIM8
description DNA excision repair protein ERCC-8 OS=Bos taurus GN=ERCC8 PE=2 SV=1
trembl
ID B9R702
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1587390 PE=4 SV=1
Gene Ontology
ID GO:0004402
description dna excision repair protein ercc-8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25019: 8753-10471 , PASA_asmbl_25022: 11540-11705 , PASA_asmbl_25023: 12400-12854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000239_010 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_000979_230 0.0613265061 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
3 Hb_009666_040 0.0640050846 - - glutathione transferase, putative [Ricinus communis]
4 Hb_003226_280 0.0671029944 - - PREDICTED: peter Pan-like protein [Populus euphratica]
5 Hb_116898_010 0.0680242636 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
6 Hb_001141_280 0.0740578943 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
7 Hb_000205_270 0.0743391982 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
8 Hb_000028_140 0.0747981496 - - surfeit locus protein, putative [Ricinus communis]
9 Hb_001829_060 0.0749405356 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_000329_310 0.0759914509 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
11 Hb_027073_040 0.0766153218 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
12 Hb_016065_010 0.0769363462 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
13 Hb_001109_020 0.0774222623 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000671_090 0.0777506411 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
15 Hb_012753_160 0.0834864217 - - ara4-interacting protein, putative [Ricinus communis]
16 Hb_001998_050 0.0835233252 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
17 Hb_000227_230 0.0836916088 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
18 Hb_000030_100 0.0842678123 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
19 Hb_007943_090 0.0859941326 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
20 Hb_001691_210 0.0880330245 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]

Gene co-expression network

sample Hb_000239_010 Hb_000239_010 Hb_000979_230 Hb_000979_230 Hb_000239_010--Hb_000979_230 Hb_009666_040 Hb_009666_040 Hb_000239_010--Hb_009666_040 Hb_003226_280 Hb_003226_280 Hb_000239_010--Hb_003226_280 Hb_116898_010 Hb_116898_010 Hb_000239_010--Hb_116898_010 Hb_001141_280 Hb_001141_280 Hb_000239_010--Hb_001141_280 Hb_000205_270 Hb_000205_270 Hb_000239_010--Hb_000205_270 Hb_000671_090 Hb_000671_090 Hb_000979_230--Hb_000671_090 Hb_000270_370 Hb_000270_370 Hb_000979_230--Hb_000270_370 Hb_001691_210 Hb_001691_210 Hb_000979_230--Hb_001691_210 Hb_001109_020 Hb_001109_020 Hb_000979_230--Hb_001109_020 Hb_000979_230--Hb_009666_040 Hb_001829_060 Hb_001829_060 Hb_009666_040--Hb_001829_060 Hb_009666_040--Hb_001141_280 Hb_009666_040--Hb_000205_270 Hb_000329_310 Hb_000329_310 Hb_009666_040--Hb_000329_310 Hb_000363_200 Hb_000363_200 Hb_003226_280--Hb_000363_200 Hb_000865_070 Hb_000865_070 Hb_003226_280--Hb_000865_070 Hb_148200_010 Hb_148200_010 Hb_003226_280--Hb_148200_010 Hb_000030_100 Hb_000030_100 Hb_003226_280--Hb_000030_100 Hb_000089_160 Hb_000089_160 Hb_003226_280--Hb_000089_160 Hb_155764_010 Hb_155764_010 Hb_116898_010--Hb_155764_010 Hb_027073_040 Hb_027073_040 Hb_116898_010--Hb_027073_040 Hb_002471_080 Hb_002471_080 Hb_116898_010--Hb_002471_080 Hb_116898_010--Hb_003226_280 Hb_012675_060 Hb_012675_060 Hb_116898_010--Hb_012675_060 Hb_001141_280--Hb_001829_060 Hb_003018_190 Hb_003018_190 Hb_001141_280--Hb_003018_190 Hb_001862_100 Hb_001862_100 Hb_001141_280--Hb_001862_100 Hb_001141_280--Hb_001109_020 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0074 3.29269 4.99881 5.4552 11.2034 16.7045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6759 27.4598 24.7984 12.5785 4.6423

CAGE analysis