Hb_002471_080

Information

Type -
Description -
Location Contig2471: 68535-74317
Sequence    

Annotation

kegg
ID rcu:RCOM_1150250
description oxidoreductase, putative
nr
ID XP_002527551.1
description oxidoreductase, putative [Ricinus communis]
swissprot
ID Q3V1T4
description Prolyl 3-hydroxylase 1 OS=Mus musculus GN=Lepre1 PE=2 SV=2
trembl
ID B9SNI2
description Oxidoreductase, putative OS=Ricinus communis GN=RCOM_1150250 PE=4 SV=1
Gene Ontology
ID GO:0005506
description prolyl 3-hydroxylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25643: 71797-74193 , PASA_asmbl_25644: 68974-74014 , PASA_asmbl_25645: 68939-74014 , PASA_asmbl_25646: 74684-123560
cDNA
(Sanger)
(ID:Location)		 040_F20.ab1: 72179-74193

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_080 0.0 - - oxidoreductase, putative [Ricinus communis]
2 Hb_000046_290 0.0468641815 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
3 Hb_001360_050 0.0688245887 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
4 Hb_001829_060 0.0696518712 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
5 Hb_124755_010 0.0718355474 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
6 Hb_000329_310 0.0726917961 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
7 Hb_000024_030 0.0751647329 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
8 Hb_148200_010 0.0753411791 - - hypothetical protein 33 [Hevea brasiliensis]
9 Hb_004724_340 0.0756866336 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
10 Hb_003938_180 0.0799353989 - - lesion inducing family protein [Populus trichocarpa]
11 Hb_001191_090 0.081437895 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
12 Hb_009393_210 0.0819385328 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
13 Hb_001083_020 0.0835245416 - - -
14 Hb_003455_040 0.0847090184 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
15 Hb_001775_110 0.085870171 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
16 Hb_005731_170 0.0861481255 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
17 Hb_001433_050 0.0863455217 - - 60S ribosomal protein L18, putative [Ricinus communis]
18 Hb_000751_130 0.0868878898 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
19 Hb_003994_040 0.0873710019 - - -
20 Hb_008544_010 0.0875593551 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002471_080 Hb_002471_080 Hb_000046_290 Hb_000046_290 Hb_002471_080--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_002471_080--Hb_001360_050 Hb_001829_060 Hb_001829_060 Hb_002471_080--Hb_001829_060 Hb_124755_010 Hb_124755_010 Hb_002471_080--Hb_124755_010 Hb_000329_310 Hb_000329_310 Hb_002471_080--Hb_000329_310 Hb_000024_030 Hb_000024_030 Hb_002471_080--Hb_000024_030 Hb_027625_010 Hb_027625_010 Hb_000046_290--Hb_027625_010 Hb_001775_110 Hb_001775_110 Hb_000046_290--Hb_001775_110 Hb_000046_290--Hb_001360_050 Hb_008544_010 Hb_008544_010 Hb_000046_290--Hb_008544_010 Hb_001191_090 Hb_001191_090 Hb_000046_290--Hb_001191_090 Hb_004724_340 Hb_004724_340 Hb_001360_050--Hb_004724_340 Hb_001833_110 Hb_001833_110 Hb_001360_050--Hb_001833_110 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_002759_060 Hb_002759_060 Hb_001360_050--Hb_002759_060 Hb_012675_060 Hb_012675_060 Hb_001360_050--Hb_012675_060 Hb_001109_020 Hb_001109_020 Hb_001829_060--Hb_001109_020 Hb_001829_060--Hb_000329_310 Hb_000046_110 Hb_000046_110 Hb_001829_060--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001829_060--Hb_003927_130 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_000751_130 Hb_000751_130 Hb_001829_060--Hb_000751_130 Hb_124755_010--Hb_000024_030 Hb_001307_090 Hb_001307_090 Hb_124755_010--Hb_001307_090 Hb_004374_140 Hb_004374_140 Hb_124755_010--Hb_004374_140 Hb_000975_110 Hb_000975_110 Hb_124755_010--Hb_000975_110 Hb_000122_020 Hb_000122_020 Hb_124755_010--Hb_000122_020 Hb_000205_270 Hb_000205_270 Hb_000329_310--Hb_000205_270 Hb_000329_310--Hb_001109_020 Hb_003455_040 Hb_003455_040 Hb_000329_310--Hb_003455_040 Hb_000329_310--Hb_003927_130 Hb_000170_010 Hb_000170_010 Hb_000329_310--Hb_000170_010 Hb_000024_030--Hb_000975_110 Hb_001433_050 Hb_001433_050 Hb_000024_030--Hb_001433_050 Hb_004032_100 Hb_004032_100 Hb_000024_030--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000024_030--Hb_006816_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.67523 2.17444 2.39798 4.57424 6.48545 11.2372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9627 20.0909 17.4782 7.20493 5.18382

CAGE analysis