Hb_003455_040

Information

Type -
Description -
Location Contig3455: 102561-106159
Sequence    

Annotation

kegg
ID rcu:RCOM_0977290
description hypothetical protein
nr
ID KDP45663.1
description hypothetical protein JCGZ_17270 [Jatropha curcas]
swissprot
ID Q8BHA0
description INO80 complex subunit C OS=Mus musculus GN=Ino80c PE=2 SV=1
trembl
ID A0A067LEK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17270 PE=4 SV=1
Gene Ontology
ID GO:0031011
description ino80 complex subunit c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36079: 102596-106046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003455_040 0.0 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
2 Hb_003376_030 0.0525790818 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
3 Hb_003994_040 0.0552303672 - - -
4 Hb_000173_220 0.0584679032 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
5 Hb_012753_160 0.0643267643 - - ara4-interacting protein, putative [Ricinus communis]
6 Hb_002027_210 0.0655800747 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
7 Hb_002097_060 0.0662502824 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_000329_310 0.0666187443 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
9 Hb_005731_170 0.068887537 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
10 Hb_003927_130 0.0703230322 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
11 Hb_010672_070 0.0706983126 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
12 Hb_001191_090 0.0708463627 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
13 Hb_001829_060 0.071298086 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
14 Hb_148200_010 0.0739113127 - - hypothetical protein 33 [Hevea brasiliensis]
15 Hb_001141_030 0.0741612009 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
16 Hb_001109_020 0.0751372561 - - conserved hypothetical protein [Ricinus communis]
17 Hb_017948_010 0.0753214271 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
18 Hb_002918_200 0.0764875648 - - -
19 Hb_002431_050 0.0770649678 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
20 Hb_001998_050 0.0776936464 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003455_040 Hb_003455_040 Hb_003376_030 Hb_003376_030 Hb_003455_040--Hb_003376_030 Hb_003994_040 Hb_003994_040 Hb_003455_040--Hb_003994_040 Hb_000173_220 Hb_000173_220 Hb_003455_040--Hb_000173_220 Hb_012753_160 Hb_012753_160 Hb_003455_040--Hb_012753_160 Hb_002027_210 Hb_002027_210 Hb_003455_040--Hb_002027_210 Hb_002097_060 Hb_002097_060 Hb_003455_040--Hb_002097_060 Hb_003376_030--Hb_002097_060 Hb_148200_010 Hb_148200_010 Hb_003376_030--Hb_148200_010 Hb_000146_020 Hb_000146_020 Hb_003376_030--Hb_000146_020 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_003376_030--Hb_002027_210 Hb_017948_010 Hb_017948_010 Hb_003994_040--Hb_017948_010 Hb_003053_030 Hb_003053_030 Hb_003994_040--Hb_003053_030 Hb_005474_060 Hb_005474_060 Hb_003994_040--Hb_005474_060 Hb_003994_040--Hb_000173_220 Hb_011644_030 Hb_011644_030 Hb_003994_040--Hb_011644_030 Hb_000173_220--Hb_002027_210 Hb_001191_090 Hb_001191_090 Hb_000173_220--Hb_001191_090 Hb_000173_220--Hb_017948_010 Hb_000574_480 Hb_000574_480 Hb_000173_220--Hb_000574_480 Hb_012675_060 Hb_012675_060 Hb_000173_220--Hb_012675_060 Hb_012753_160--Hb_012675_060 Hb_001140_060 Hb_001140_060 Hb_012753_160--Hb_001140_060 Hb_000072_080 Hb_000072_080 Hb_012753_160--Hb_000072_080 Hb_001998_050 Hb_001998_050 Hb_012753_160--Hb_001998_050 Hb_012753_160--Hb_000574_480 Hb_005432_030 Hb_005432_030 Hb_002027_210--Hb_005432_030 Hb_002027_210--Hb_000146_020 Hb_002027_210--Hb_001191_090 Hb_000069_100 Hb_000069_100 Hb_002097_060--Hb_000069_100 Hb_006573_220 Hb_006573_220 Hb_002097_060--Hb_006573_220 Hb_001575_020 Hb_001575_020 Hb_002097_060--Hb_001575_020 Hb_002097_060--Hb_148200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2998 6.89291 8.06735 10.6942 15.3314 22.2108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.8839 55.6969 36.7431 9.811 10.3179

CAGE analysis