Hb_003994_040

Information

Type -
Description -
Location Contig3994: 16645-20420
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39722: 16662-20150 , PASA_asmbl_39725: 20174-20287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_040 0.0 - - -
2 Hb_003455_040 0.0552303672 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
3 Hb_017948_010 0.0592331435 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
4 Hb_003053_030 0.0676294067 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
5 Hb_005474_060 0.069995776 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
6 Hb_000173_220 0.0701178546 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
7 Hb_011644_030 0.0723063122 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
8 Hb_001863_400 0.0758414508 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
9 Hb_001141_030 0.0768093893 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
10 Hb_012753_160 0.0776701652 - - ara4-interacting protein, putative [Ricinus communis]
11 Hb_000441_190 0.0777528356 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
12 Hb_000136_170 0.0784235943 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
13 Hb_002097_060 0.0795685746 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_002687_170 0.0815496594 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
15 Hb_148200_010 0.0818258955 - - hypothetical protein 33 [Hevea brasiliensis]
16 Hb_001279_360 0.0824262538 - - protein with unknown function [Ricinus communis]
17 Hb_001083_020 0.0825248712 - - -
18 Hb_003893_050 0.0830734954 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
19 Hb_001633_030 0.083236092 - - -
20 Hb_005731_170 0.083305475 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]

Gene co-expression network

sample Hb_003994_040 Hb_003994_040 Hb_003455_040 Hb_003455_040 Hb_003994_040--Hb_003455_040 Hb_017948_010 Hb_017948_010 Hb_003994_040--Hb_017948_010 Hb_003053_030 Hb_003053_030 Hb_003994_040--Hb_003053_030 Hb_005474_060 Hb_005474_060 Hb_003994_040--Hb_005474_060 Hb_000173_220 Hb_000173_220 Hb_003994_040--Hb_000173_220 Hb_011644_030 Hb_011644_030 Hb_003994_040--Hb_011644_030 Hb_003376_030 Hb_003376_030 Hb_003455_040--Hb_003376_030 Hb_003455_040--Hb_000173_220 Hb_012753_160 Hb_012753_160 Hb_003455_040--Hb_012753_160 Hb_002027_210 Hb_002027_210 Hb_003455_040--Hb_002027_210 Hb_002097_060 Hb_002097_060 Hb_003455_040--Hb_002097_060 Hb_017948_010--Hb_000173_220 Hb_153112_030 Hb_153112_030 Hb_017948_010--Hb_153112_030 Hb_001279_360 Hb_001279_360 Hb_017948_010--Hb_001279_360 Hb_001083_020 Hb_001083_020 Hb_017948_010--Hb_001083_020 Hb_017948_010--Hb_003053_030 Hb_001191_090 Hb_001191_090 Hb_003053_030--Hb_001191_090 Hb_000181_300 Hb_000181_300 Hb_003053_030--Hb_000181_300 Hb_148200_010 Hb_148200_010 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_000905_180 Hb_000905_180 Hb_005474_060--Hb_000905_180 Hb_002687_170 Hb_002687_170 Hb_005474_060--Hb_002687_170 Hb_005474_060--Hb_011644_030 Hb_005474_060--Hb_003053_030 Hb_005474_060--Hb_000181_300 Hb_000173_220--Hb_002027_210 Hb_000173_220--Hb_001191_090 Hb_000574_480 Hb_000574_480 Hb_000173_220--Hb_000574_480 Hb_012675_060 Hb_012675_060 Hb_000173_220--Hb_012675_060 Hb_006541_010 Hb_006541_010 Hb_011644_030--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_011644_030--Hb_004567_120 Hb_026048_070 Hb_026048_070 Hb_011644_030--Hb_026048_070 Hb_000136_170 Hb_000136_170 Hb_011644_030--Hb_000136_170 Hb_011644_030--Hb_000364_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4068 5.52081 5.32651 9.0282 10.1041 17.8455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.5693 51.8886 29.8562 10.9077 11.0042

CAGE analysis