Hb_011644_030

Information

Type -
Description -
Location Contig11644: 27601-30312
Sequence    

Annotation

kegg
ID pxb:103945173
description 50S ribosomal protein L12, cyanelle-like
nr
ID XP_009353984.1
description PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
swissprot
ID B3EER1
description 50S ribosomal protein L7/L12 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rplL PE=3 SV=1
trembl
ID M5WHF2
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1
Gene Ontology
ID GO:0005739
description 50s ribosomal protein cyanelle

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05097: 28667-30156 , PASA_asmbl_05098: 28667-30156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011644_030 0.0 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
2 Hb_006541_010 0.0678615382 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
3 Hb_004567_120 0.0687895251 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
4 Hb_003994_040 0.0723063122 - - -
5 Hb_026048_070 0.0752709194 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
6 Hb_000136_170 0.0762707272 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
7 Hb_000364_030 0.0775831819 - - RNA binding protein, putative [Ricinus communis]
8 Hb_000441_190 0.0786998646 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
9 Hb_027625_010 0.0788551623 - - PREDICTED: protein sym-1-like [Jatropha curcas]
10 Hb_003053_030 0.0792750096 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
11 Hb_005474_060 0.0793785158 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
12 Hb_005568_120 0.0823429645 - - Prephenate dehydratase [Hevea brasiliensis]
13 Hb_003623_050 0.0831021945 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012490_050 0.0838845892 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
15 Hb_006816_530 0.0839464296 - - 60S ribosomal protein L18, putative [Ricinus communis]
16 Hb_007441_040 0.0843974955 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
17 Hb_001505_020 0.0850104661 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
18 Hb_000181_300 0.0855422219 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
19 Hb_005883_100 0.0855660325 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
20 Hb_000024_030 0.0862374772 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]

Gene co-expression network

sample Hb_011644_030 Hb_011644_030 Hb_006541_010 Hb_006541_010 Hb_011644_030--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_011644_030--Hb_004567_120 Hb_003994_040 Hb_003994_040 Hb_011644_030--Hb_003994_040 Hb_026048_070 Hb_026048_070 Hb_011644_030--Hb_026048_070 Hb_000136_170 Hb_000136_170 Hb_011644_030--Hb_000136_170 Hb_000364_030 Hb_000364_030 Hb_011644_030--Hb_000364_030 Hb_033153_060 Hb_033153_060 Hb_006541_010--Hb_033153_060 Hb_001616_040 Hb_001616_040 Hb_006541_010--Hb_001616_040 Hb_004459_040 Hb_004459_040 Hb_006541_010--Hb_004459_040 Hb_007576_170 Hb_007576_170 Hb_006541_010--Hb_007576_170 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_004216_050 Hb_004216_050 Hb_004567_120--Hb_004216_050 Hb_006478_150 Hb_006478_150 Hb_004567_120--Hb_006478_150 Hb_002676_090 Hb_002676_090 Hb_004567_120--Hb_002676_090 Hb_005568_120 Hb_005568_120 Hb_004567_120--Hb_005568_120 Hb_004567_120--Hb_000136_170 Hb_003455_040 Hb_003455_040 Hb_003994_040--Hb_003455_040 Hb_017948_010 Hb_017948_010 Hb_003994_040--Hb_017948_010 Hb_003053_030 Hb_003053_030 Hb_003994_040--Hb_003053_030 Hb_005474_060 Hb_005474_060 Hb_003994_040--Hb_005474_060 Hb_000173_220 Hb_000173_220 Hb_003994_040--Hb_000173_220 Hb_003623_050 Hb_003623_050 Hb_026048_070--Hb_003623_050 Hb_001016_090 Hb_001016_090 Hb_026048_070--Hb_001016_090 Hb_026048_070--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_026048_070--Hb_148200_010 Hb_001279_360 Hb_001279_360 Hb_026048_070--Hb_001279_360 Hb_002713_070 Hb_002713_070 Hb_000136_170--Hb_002713_070 Hb_000134_070 Hb_000134_070 Hb_000136_170--Hb_000134_070 Hb_001505_020 Hb_001505_020 Hb_000136_170--Hb_001505_020 Hb_000136_170--Hb_003623_050 Hb_000265_050 Hb_000265_050 Hb_000136_170--Hb_000265_050 Hb_000364_030--Hb_003053_030 Hb_002374_390 Hb_002374_390 Hb_000364_030--Hb_002374_390 Hb_000181_300 Hb_000181_300 Hb_000364_030--Hb_000181_300 Hb_001191_090 Hb_001191_090 Hb_000364_030--Hb_001191_090 Hb_000364_030--Hb_148200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.653 5.56445 6.84698 12.6222 7.33841 19.9966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.546 47.5538 27.5143 16.1063 11.1719

CAGE analysis