Hb_001016_090

Information

Type -
Description -
Location Contig1016: 116501-124113
Sequence    

Annotation

kegg
ID pmum:103340300
description receptor homology region, transmembrane domain- and RING domain-containing protein 1
nr
ID XP_011043231.1
description PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
swissprot
ID Q9M622
description Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana GN=RMR1 PE=2 SV=1
trembl
ID A0A067LHG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06571 PE=4 SV=1
Gene Ontology
ID GO:0000306
description receptor homology transmembrane domain- and ring domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00759: 116533-118153 , PASA_asmbl_00760: 120395-120565 , PASA_asmbl_00763: 119633-123944 , PASA_asmbl_00764: 124940-125053
cDNA
(Sanger)
(ID:Location)		 001_H07.ab1: 116541-116735

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_090 0.0 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
2 Hb_032260_030 0.0522854301 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
3 Hb_002374_390 0.0679802124 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
4 Hb_148200_010 0.0733876666 - - hypothetical protein 33 [Hevea brasiliensis]
5 Hb_002925_030 0.0743063829 - - 40S ribosomal protein S16B [Hevea brasiliensis]
6 Hb_000905_180 0.0743626581 - - 60S ribosomal protein L31A [Hevea brasiliensis]
7 Hb_148930_010 0.0761603723 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
8 Hb_000193_120 0.0768397676 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
9 Hb_026048_070 0.0785493327 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
10 Hb_000881_080 0.0798973548 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001832_120 0.080054307 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
12 Hb_001863_090 0.0809724726 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
13 Hb_003053_030 0.0839173752 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
14 Hb_003185_050 0.0839781391 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
15 Hb_000181_300 0.0844624995 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
16 Hb_000163_130 0.0852022491 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
17 Hb_005883_100 0.0854284803 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
18 Hb_004156_040 0.0865111735 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
19 Hb_003398_120 0.0869639473 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_000364_030 0.087644316 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001016_090 Hb_001016_090 Hb_032260_030 Hb_032260_030 Hb_001016_090--Hb_032260_030 Hb_002374_390 Hb_002374_390 Hb_001016_090--Hb_002374_390 Hb_148200_010 Hb_148200_010 Hb_001016_090--Hb_148200_010 Hb_002925_030 Hb_002925_030 Hb_001016_090--Hb_002925_030 Hb_000905_180 Hb_000905_180 Hb_001016_090--Hb_000905_180 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010 Hb_000881_080 Hb_000881_080 Hb_032260_030--Hb_000881_080 Hb_032260_030--Hb_002925_030 Hb_005883_100 Hb_005883_100 Hb_032260_030--Hb_005883_100 Hb_001863_090 Hb_001863_090 Hb_032260_030--Hb_001863_090 Hb_003398_120 Hb_003398_120 Hb_032260_030--Hb_003398_120 Hb_000181_300 Hb_000181_300 Hb_002374_390--Hb_000181_300 Hb_000364_030 Hb_000364_030 Hb_002374_390--Hb_000364_030 Hb_005731_170 Hb_005731_170 Hb_002374_390--Hb_005731_170 Hb_003185_050 Hb_003185_050 Hb_002374_390--Hb_003185_050 Hb_002374_390--Hb_000905_180 Hb_001191_090 Hb_001191_090 Hb_148200_010--Hb_001191_090 Hb_003376_030 Hb_003376_030 Hb_148200_010--Hb_003376_030 Hb_003053_030 Hb_003053_030 Hb_148200_010--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_002925_030--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_002925_030--Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_002925_030--Hb_000227_230 Hb_002925_030--Hb_001863_090 Hb_002713_070 Hb_002713_070 Hb_002925_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002925_030--Hb_011311_010 Hb_000163_130 Hb_000163_130 Hb_000905_180--Hb_000163_130 Hb_000236_150 Hb_000236_150 Hb_000905_180--Hb_000236_150 Hb_005474_060 Hb_005474_060 Hb_000905_180--Hb_005474_060 Hb_000905_180--Hb_003185_050 Hb_002835_320 Hb_002835_320 Hb_148930_010--Hb_002835_320 Hb_148930_010--Hb_001433_050 Hb_001248_080 Hb_001248_080 Hb_148930_010--Hb_001248_080 Hb_003376_130 Hb_003376_130 Hb_148930_010--Hb_003376_130 Hb_148930_010--Hb_148200_010 Hb_148930_010--Hb_003398_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3529 5.93933 5.05528 7.49041 8.05174 11.7348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.2682 47.8856 25.4692 16.9846 4.71981

CAGE analysis