Hb_001863_090

Information

Type -
Description -
Location Contig1863: 53371-55179
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07000g
description POPTRDRAFT_819098; hypothetical protein
nr
ID XP_002308991.1
description hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
swissprot
ID Q6DJI4
description 39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis GN=mrpl41-a PE=2 SV=1
trembl
ID B9HAL7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07000g PE=4 SV=1
Gene Ontology
ID GO:0005840
description 39s ribosomal protein l41- mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18326: 53367-55343
cDNA
(Sanger)
(ID:Location)		 007_B08.ab1: 53367-55253 , 050_O14.ab1: 53367-55253

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_090 0.0 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
2 Hb_002925_030 0.0651664793 - - 40S ribosomal protein S16B [Hevea brasiliensis]
3 Hb_011311_010 0.0784910192 - - 60S ribosomal protein L27C [Hevea brasiliensis]
4 Hb_002660_030 0.0786182099 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001016_090 0.0809724726 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
6 Hb_003398_120 0.0828267347 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
7 Hb_032260_030 0.0841308161 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
8 Hb_148930_010 0.0861420389 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
9 Hb_004724_160 0.0899440085 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
10 Hb_001832_120 0.0925445968 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
11 Hb_002713_070 0.0950105731 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
12 Hb_002835_320 0.1001384682 - - 60S ribosomal protein L27B [Hevea brasiliensis]
13 Hb_172221_010 0.1002937638 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
14 Hb_026398_010 0.1023568839 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
15 Hb_001268_140 0.1049783487 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000264_090 0.1055163084 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
17 Hb_001269_270 0.1064938286 - - 60S ribosomal protein L27B [Hevea brasiliensis]
18 Hb_001248_080 0.1070589007 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
19 Hb_003734_140 0.1082406586 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000227_230 0.1082534787 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]

Gene co-expression network

sample Hb_001863_090 Hb_001863_090 Hb_002925_030 Hb_002925_030 Hb_001863_090--Hb_002925_030 Hb_011311_010 Hb_011311_010 Hb_001863_090--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_001863_090--Hb_002660_030 Hb_001016_090 Hb_001016_090 Hb_001863_090--Hb_001016_090 Hb_003398_120 Hb_003398_120 Hb_001863_090--Hb_003398_120 Hb_032260_030 Hb_032260_030 Hb_001863_090--Hb_032260_030 Hb_002925_030--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_002925_030--Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_002925_030--Hb_000227_230 Hb_002713_070 Hb_002713_070 Hb_002925_030--Hb_002713_070 Hb_002925_030--Hb_011311_010 Hb_011311_010--Hb_002660_030 Hb_002588_010 Hb_002588_010 Hb_011311_010--Hb_002588_010 Hb_026398_010 Hb_026398_010 Hb_011311_010--Hb_026398_010 Hb_007944_040 Hb_007944_040 Hb_011311_010--Hb_007944_040 Hb_004724_160 Hb_004724_160 Hb_011311_010--Hb_004724_160 Hb_002660_030--Hb_002713_070 Hb_003226_210 Hb_003226_210 Hb_002660_030--Hb_003226_210 Hb_000134_070 Hb_000134_070 Hb_002660_030--Hb_000134_070 Hb_002660_030--Hb_026398_010 Hb_002660_030--Hb_002925_030 Hb_001016_090--Hb_032260_030 Hb_002374_390 Hb_002374_390 Hb_001016_090--Hb_002374_390 Hb_148200_010 Hb_148200_010 Hb_001016_090--Hb_148200_010 Hb_001016_090--Hb_002925_030 Hb_000905_180 Hb_000905_180 Hb_001016_090--Hb_000905_180 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010 Hb_001248_080 Hb_001248_080 Hb_003398_120--Hb_001248_080 Hb_003398_120--Hb_000227_230 Hb_003398_120--Hb_001998_050 Hb_003398_120--Hb_148930_010 Hb_003398_120--Hb_011311_010 Hb_000881_080 Hb_000881_080 Hb_032260_030--Hb_000881_080 Hb_032260_030--Hb_002925_030 Hb_005883_100 Hb_005883_100 Hb_032260_030--Hb_005883_100 Hb_032260_030--Hb_003398_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8797 11.3503 13.3098 12.8019 22.4126 31.7061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.5988 113.408 40.2299 42.7072 6.72728

CAGE analysis