Hb_001248_080

Information

Type -
Description -
Location Contig1248: 81306-82329
Sequence    

Annotation

kegg
ID vvi:100262886
description 40S ribosomal protein S29
nr
ID XP_010272246.1
description PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
swissprot
ID Q5I7K3
description 40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=1 SV=1
trembl
ID A0A059BRC4
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_F02264 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07518: 81250-82319
cDNA
(Sanger)
(ID:Location)		 001_P24.ab1: 81250-82234 , 004_G17.ab1: 81249-82230 , 006_D18.ab1: 81250-82231 , 012_A08.ab1: 81250-82235 , 012_L15.ab1: 81250-82232 , 013_G11.ab1: 81250-82235 , 014_M21.ab1: 81250-82259 , 019_E21.ab1: 81243-82234 , 032_O01.ab1: 81249-82319 , 033_D18.ab1: 81250-82234 , 039_I12.ab1: 81249-82235 , 046_C12.ab1: 81250-82259

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_080 0.0 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
2 Hb_155764_020 0.0648105762 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
3 Hb_003398_120 0.0675412585 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_148930_010 0.0697584404 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
5 Hb_004724_160 0.0725636303 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
6 Hb_001998_050 0.0740068909 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
7 Hb_000563_240 0.0740366222 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
8 Hb_011311_010 0.0778483983 - - 60S ribosomal protein L27C [Hevea brasiliensis]
9 Hb_001863_400 0.0788795148 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
10 Hb_002925_030 0.0799830554 - - 40S ribosomal protein S16B [Hevea brasiliensis]
11 Hb_005731_170 0.08041064 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
12 Hb_000099_060 0.0825047657 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
13 Hb_000264_090 0.0834845066 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
14 Hb_001638_020 0.0844936208 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_003376_030 0.0885523403 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
16 Hb_001300_270 0.0902917877 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
17 Hb_002097_060 0.0903922949 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_001268_140 0.0909118588 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000028_400 0.0910648922 - - Protein SSU72, putative [Ricinus communis]
20 Hb_003455_040 0.091093999 - - hypothetical protein JCGZ_17270 [Jatropha curcas]

Gene co-expression network

sample Hb_001248_080 Hb_001248_080 Hb_155764_020 Hb_155764_020 Hb_001248_080--Hb_155764_020 Hb_003398_120 Hb_003398_120 Hb_001248_080--Hb_003398_120 Hb_148930_010 Hb_148930_010 Hb_001248_080--Hb_148930_010 Hb_004724_160 Hb_004724_160 Hb_001248_080--Hb_004724_160 Hb_001998_050 Hb_001998_050 Hb_001248_080--Hb_001998_050 Hb_000563_240 Hb_000563_240 Hb_001248_080--Hb_000563_240 Hb_155764_020--Hb_000563_240 Hb_001268_140 Hb_001268_140 Hb_155764_020--Hb_001268_140 Hb_000099_060 Hb_000099_060 Hb_155764_020--Hb_000099_060 Hb_000134_330 Hb_000134_330 Hb_155764_020--Hb_000134_330 Hb_001300_270 Hb_001300_270 Hb_155764_020--Hb_001300_270 Hb_002925_030 Hb_002925_030 Hb_003398_120--Hb_002925_030 Hb_000227_230 Hb_000227_230 Hb_003398_120--Hb_000227_230 Hb_003398_120--Hb_001998_050 Hb_003398_120--Hb_148930_010 Hb_011311_010 Hb_011311_010 Hb_003398_120--Hb_011311_010 Hb_002835_320 Hb_002835_320 Hb_148930_010--Hb_002835_320 Hb_001433_050 Hb_001433_050 Hb_148930_010--Hb_001433_050 Hb_003376_130 Hb_003376_130 Hb_148930_010--Hb_003376_130 Hb_148200_010 Hb_148200_010 Hb_148930_010--Hb_148200_010 Hb_004724_160--Hb_011311_010 Hb_001269_270 Hb_001269_270 Hb_004724_160--Hb_001269_270 Hb_004724_160--Hb_001268_140 Hb_004724_160--Hb_148930_010 Hb_001045_080 Hb_001045_080 Hb_004724_160--Hb_001045_080 Hb_001998_050--Hb_000227_230 Hb_000574_480 Hb_000574_480 Hb_001998_050--Hb_000574_480 Hb_001998_050--Hb_002925_030 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_004586_320 Hb_004586_320 Hb_001998_050--Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_001998_050--Hb_012675_060 Hb_000563_240--Hb_000099_060 Hb_007575_070 Hb_007575_070 Hb_000563_240--Hb_007575_070 Hb_000563_240--Hb_011311_010 Hb_000563_240--Hb_001268_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
449.655 291.227 234.971 238.14 422.287 672.09
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1135.65 1942.92 1052.72 386.693 113.305

CAGE analysis