Hb_148200_010

Information

Type -
Description -
Location Contig148200: 6542-17854
Sequence    

Annotation

kegg
ID rcu:RCOM_0954650
description hypothetical protein
nr
ID ADR71312.1
description hypothetical protein 33 [Hevea brasiliensis]
swissprot
ID Q941A6
description Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana GN=SDH6 PE=1 SV=1
trembl
ID I3NMS5
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005749
description succinate dehydrogenase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12145: 6495-17900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148200_010 0.0 - - hypothetical protein 33 [Hevea brasiliensis]
2 Hb_001191_090 0.05415546 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
3 Hb_003376_030 0.0572426372 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
4 Hb_003053_030 0.0574876352 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
5 Hb_001433_050 0.0604743151 - - 60S ribosomal protein L18, putative [Ricinus communis]
6 Hb_004156_040 0.0645636672 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
7 Hb_001279_360 0.0647826745 - - protein with unknown function [Ricinus communis]
8 Hb_002097_060 0.0683307667 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_012675_060 0.0688519199 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
10 Hb_000329_330 0.0688519223 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
11 Hb_004586_320 0.0695395918 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
12 Hb_000181_300 0.0699034469 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
13 Hb_000173_220 0.0715062926 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
14 Hb_006573_220 0.0726703179 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
15 Hb_005731_170 0.0728695691 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
16 Hb_148930_010 0.073120801 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
17 Hb_001016_090 0.0733876666 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
18 Hb_003455_040 0.0739113127 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
19 Hb_003376_130 0.073993651 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
20 Hb_000364_030 0.0746771348 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_148200_010 Hb_148200_010 Hb_001191_090 Hb_001191_090 Hb_148200_010--Hb_001191_090 Hb_003376_030 Hb_003376_030 Hb_148200_010--Hb_003376_030 Hb_003053_030 Hb_003053_030 Hb_148200_010--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_001191_090--Hb_003053_030 Hb_006573_220 Hb_006573_220 Hb_001191_090--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_001191_090--Hb_003376_030 Hb_003455_040 Hb_003455_040 Hb_003376_030--Hb_003455_040 Hb_002097_060 Hb_002097_060 Hb_003376_030--Hb_002097_060 Hb_000146_020 Hb_000146_020 Hb_003376_030--Hb_000146_020 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_002027_210 Hb_002027_210 Hb_003376_030--Hb_002027_210 Hb_003053_030--Hb_000181_300 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_001383_060 Hb_001383_060 Hb_001433_050--Hb_001383_060 Hb_000024_030 Hb_000024_030 Hb_001433_050--Hb_000024_030 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_148930_010 Hb_148930_010 Hb_001433_050--Hb_148930_010 Hb_000193_120 Hb_000193_120 Hb_004156_040--Hb_000193_120 Hb_000012_100 Hb_000012_100 Hb_004156_040--Hb_000012_100 Hb_004156_040--Hb_001191_090 Hb_004156_040--Hb_000181_300 Hb_017948_010 Hb_017948_010 Hb_001279_360--Hb_017948_010 Hb_001279_360--Hb_003053_030 Hb_005181_030 Hb_005181_030 Hb_001279_360--Hb_005181_030 Hb_156947_010 Hb_156947_010 Hb_001279_360--Hb_156947_010 Hb_001279_360--Hb_001433_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.3222 25.4806 36.2714 45.8162 65.8731 84.6758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
196.414 243.072 162.351 79.7328 37.4374

CAGE analysis