Hb_148930_010

Information

Type -
Description -
Location Contig148930: 9250-11653
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23920g
description POPTRDRAFT_833890; hypothetical protein
nr
ID XP_012090167.1
description PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
swissprot
ID P43935
description Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1
trembl
ID B9HUX7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s23920g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12393: 9248-11327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148930_010 0.0 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
2 Hb_002835_320 0.0672532149 - - 60S ribosomal protein L27B [Hevea brasiliensis]
3 Hb_001433_050 0.0679951613 - - 60S ribosomal protein L18, putative [Ricinus communis]
4 Hb_001248_080 0.0697584404 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
5 Hb_003376_130 0.0710146101 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
6 Hb_148200_010 0.073120801 - - hypothetical protein 33 [Hevea brasiliensis]
7 Hb_003398_120 0.0733284207 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
8 Hb_001016_090 0.0761603723 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
9 Hb_000329_330 0.0761710531 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
10 Hb_000085_330 0.0788906654 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
11 Hb_012265_010 0.0802427675 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
12 Hb_000163_130 0.0826027901 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
13 Hb_004724_160 0.0828841634 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
14 Hb_002925_030 0.0854120616 - - 40S ribosomal protein S16B [Hevea brasiliensis]
15 Hb_001863_090 0.0861420389 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
16 Hb_155764_020 0.0879372 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
17 Hb_003226_280 0.0890857747 - - PREDICTED: peter Pan-like protein [Populus euphratica]
18 Hb_001123_120 0.0891022302 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
19 Hb_002097_060 0.0893861532 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_003086_100 0.0904002175 - - hypothetical protein JCGZ_08729 [Jatropha curcas]

Gene co-expression network

sample Hb_148930_010 Hb_148930_010 Hb_002835_320 Hb_002835_320 Hb_148930_010--Hb_002835_320 Hb_001433_050 Hb_001433_050 Hb_148930_010--Hb_001433_050 Hb_001248_080 Hb_001248_080 Hb_148930_010--Hb_001248_080 Hb_003376_130 Hb_003376_130 Hb_148930_010--Hb_003376_130 Hb_148200_010 Hb_148200_010 Hb_148930_010--Hb_148200_010 Hb_003398_120 Hb_003398_120 Hb_148930_010--Hb_003398_120 Hb_000163_130 Hb_000163_130 Hb_002835_320--Hb_000163_130 Hb_009851_100 Hb_009851_100 Hb_002835_320--Hb_009851_100 Hb_003053_030 Hb_003053_030 Hb_002835_320--Hb_003053_030 Hb_000312_090 Hb_000312_090 Hb_002835_320--Hb_000312_090 Hb_002835_320--Hb_001433_050 Hb_001383_060 Hb_001383_060 Hb_001433_050--Hb_001383_060 Hb_000024_030 Hb_000024_030 Hb_001433_050--Hb_000024_030 Hb_001433_050--Hb_148200_010 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_155764_020 Hb_155764_020 Hb_001248_080--Hb_155764_020 Hb_001248_080--Hb_003398_120 Hb_004724_160 Hb_004724_160 Hb_001248_080--Hb_004724_160 Hb_001998_050 Hb_001998_050 Hb_001248_080--Hb_001998_050 Hb_000563_240 Hb_000563_240 Hb_001248_080--Hb_000563_240 Hb_000329_330 Hb_000329_330 Hb_003376_130--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_003376_130--Hb_000212_260 Hb_003086_100 Hb_003086_100 Hb_003376_130--Hb_003086_100 Hb_003376_130--Hb_148200_010 Hb_002571_020 Hb_002571_020 Hb_003376_130--Hb_002571_020 Hb_001191_090 Hb_001191_090 Hb_148200_010--Hb_001191_090 Hb_003376_030 Hb_003376_030 Hb_148200_010--Hb_003376_030 Hb_148200_010--Hb_003053_030 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_002925_030 Hb_002925_030 Hb_003398_120--Hb_002925_030 Hb_000227_230 Hb_000227_230 Hb_003398_120--Hb_000227_230 Hb_003398_120--Hb_001998_050 Hb_011311_010 Hb_011311_010 Hb_003398_120--Hb_011311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0346 3.69459 4.31391 6.4963 9.79272 16.2604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.7671 46.1826 24.528 13.0441 2.68019

CAGE analysis