Hb_001998_050

Information

Type -
Description -
Location Contig1998: 65215-74784
Sequence    

Annotation

kegg
ID rcu:RCOM_0140300
description Protein C9orf32, putative
nr
ID XP_012075517.1
description PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
swissprot
ID Q5PP70
description Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1
trembl
ID A0A067KFF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09135 PE=4 SV=1
Gene Ontology
ID GO:0008168
description alpha n-terminal protein methyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19987: 65170-74778 , PASA_asmbl_19988: 65994-66257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_050 0.0 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
2 Hb_000227_230 0.0483249402 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
3 Hb_000574_480 0.0565364633 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
4 Hb_002925_030 0.0602171907 - - 40S ribosomal protein S16B [Hevea brasiliensis]
5 Hb_012753_160 0.0640188904 - - ara4-interacting protein, putative [Ricinus communis]
6 Hb_004586_320 0.0678163773 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
7 Hb_012675_060 0.067935002 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
8 Hb_005731_170 0.0697869336 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
9 Hb_000363_480 0.0702044382 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
10 Hb_007943_090 0.0707016306 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
11 Hb_001505_020 0.0724315871 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
12 Hb_003398_120 0.0727095869 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
13 Hb_001143_080 0.0728062431 - - PREDICTED: F-box protein 7 [Jatropha curcas]
14 Hb_001248_080 0.0740068909 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
15 Hb_001109_020 0.0741056353 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001433_050 0.0750519819 - - 60S ribosomal protein L18, putative [Ricinus communis]
17 Hb_000009_160 0.0753366222 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
18 Hb_001141_030 0.0771415875 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
19 Hb_003455_040 0.0776936464 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
20 Hb_148200_010 0.0784334533 - - hypothetical protein 33 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001998_050 Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_001998_050--Hb_000227_230 Hb_000574_480 Hb_000574_480 Hb_001998_050--Hb_000574_480 Hb_002925_030 Hb_002925_030 Hb_001998_050--Hb_002925_030 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_004586_320 Hb_004586_320 Hb_001998_050--Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_001998_050--Hb_012675_060 Hb_000227_230--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_000227_230--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_000227_230--Hb_003398_120 Hb_001505_020 Hb_001505_020 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_003656_070 Hb_003656_070 Hb_000574_480--Hb_003656_070 Hb_002963_010 Hb_002963_010 Hb_000574_480--Hb_002963_010 Hb_008173_090 Hb_008173_090 Hb_000574_480--Hb_008173_090 Hb_000574_480--Hb_012675_060 Hb_000173_220 Hb_000173_220 Hb_000574_480--Hb_000173_220 Hb_002925_030--Hb_003398_120 Hb_001863_090 Hb_001863_090 Hb_002925_030--Hb_001863_090 Hb_002713_070 Hb_002713_070 Hb_002925_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002925_030--Hb_011311_010 Hb_012753_160--Hb_012675_060 Hb_001140_060 Hb_001140_060 Hb_012753_160--Hb_001140_060 Hb_000072_080 Hb_000072_080 Hb_012753_160--Hb_000072_080 Hb_003455_040 Hb_003455_040 Hb_012753_160--Hb_003455_040 Hb_012753_160--Hb_000574_480 Hb_004586_320--Hb_012675_060 Hb_004586_320--Hb_003656_070 Hb_007943_090 Hb_007943_090 Hb_004586_320--Hb_007943_090 Hb_004586_320--Hb_000574_480 Hb_148200_010 Hb_148200_010 Hb_004586_320--Hb_148200_010 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_000834_270 Hb_000834_270 Hb_012675_060--Hb_000834_270 Hb_012675_060--Hb_000173_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.30866 4.97236 4.08785 5.90221 8.60389 11.3871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1072 27.5164 17.4366 8.30463 3.13376

CAGE analysis