Hb_008173_090

Information

Type -
Description -
Location Contig8173: 46068-49596
Sequence    

Annotation

kegg
ID rcu:RCOM_1686480
description glutathione peroxidase, putative (EC:1.11.1.12)
nr
ID XP_002509791.1
description glutathione peroxidase, putative [Ricinus communis]
swissprot
ID Q8LBU2
description Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1
trembl
ID B9RCA7
description Glutathione peroxidase OS=Ricinus communis GN=RCOM_1686480 PE=3 SV=1
Gene Ontology
ID GO:0005634
description probable glutathione peroxidase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59465: 46221-49541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008173_090 0.0 - - glutathione peroxidase, putative [Ricinus communis]
2 Hb_001235_190 0.04635021 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
3 Hb_003656_070 0.048052455 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
4 Hb_000200_100 0.0527919055 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
5 Hb_000574_480 0.0592876534 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
6 Hb_000970_010 0.0622820201 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
7 Hb_002182_060 0.0629463668 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
8 Hb_029866_060 0.0640667554 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
9 Hb_001722_100 0.0648887361 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007479_020 0.0683814958 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
11 Hb_000134_330 0.0685181925 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
12 Hb_000099_060 0.0696188455 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
13 Hb_002963_010 0.0712783806 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
14 Hb_002301_140 0.073844785 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
15 Hb_002110_120 0.0757873898 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
16 Hb_001383_060 0.076892078 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
17 Hb_001998_050 0.0786479162 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
18 Hb_001257_080 0.0790162783 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001818_020 0.0792807304 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
20 Hb_000834_270 0.0794964513 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008173_090 Hb_008173_090 Hb_001235_190 Hb_001235_190 Hb_008173_090--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_008173_090--Hb_003656_070 Hb_000200_100 Hb_000200_100 Hb_008173_090--Hb_000200_100 Hb_000574_480 Hb_000574_480 Hb_008173_090--Hb_000574_480 Hb_000970_010 Hb_000970_010 Hb_008173_090--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_008173_090--Hb_002182_060 Hb_001722_100 Hb_001722_100 Hb_001235_190--Hb_001722_100 Hb_002963_010 Hb_002963_010 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_000307_090 Hb_000307_090 Hb_001235_190--Hb_000307_090 Hb_002110_120 Hb_002110_120 Hb_001235_190--Hb_002110_120 Hb_001047_230 Hb_001047_230 Hb_003656_070--Hb_001047_230 Hb_003656_070--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_002301_140 Hb_002301_140 Hb_000200_100--Hb_002301_140 Hb_000200_100--Hb_001235_190 Hb_001257_080 Hb_001257_080 Hb_000200_100--Hb_001257_080 Hb_000200_100--Hb_000970_010 Hb_000200_100--Hb_002182_060 Hb_001998_050 Hb_001998_050 Hb_000574_480--Hb_001998_050 Hb_000574_480--Hb_002963_010 Hb_012675_060 Hb_012675_060 Hb_000574_480--Hb_012675_060 Hb_000173_220 Hb_000173_220 Hb_000574_480--Hb_000173_220 Hb_001818_020 Hb_001818_020 Hb_000970_010--Hb_001818_020 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_001584_070 Hb_001584_070 Hb_000970_010--Hb_001584_070 Hb_000545_150 Hb_000545_150 Hb_000970_010--Hb_000545_150 Hb_000099_060 Hb_000099_060 Hb_002182_060--Hb_000099_060 Hb_002182_060--Hb_000970_010 Hb_003106_050 Hb_003106_050 Hb_002182_060--Hb_003106_050 Hb_002182_060--Hb_002301_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.37 25.6247 19.9251 23.1285 40.0028 40.3824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.3858 111.983 59.0228 24.3317 12.8938

CAGE analysis