Hb_012675_060

Information

Type -
Description -
Location Contig12675: 50592-51548
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa007715mg
description hypothetical protein
nr
ID XP_007222158.1
description hypothetical protein PRUPE_ppa007715mg [Prunus persica]
swissprot
ID Q6Z6G6
description Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica GN=NCS6 PE=2 SV=1
trembl
ID M5XB75
description Cytoplasmic tRNA 2-thiolation protein 1 OS=Prunus persica GN=NCS6 PE=3 SV=1
Gene Ontology
ID GO:0005737
description cytoplasmic trna 2-thiolation protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08079: 46495-49669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012675_060 0.0 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
2 Hb_012753_160 0.0495980979 - - ara4-interacting protein, putative [Ricinus communis]
3 Hb_010080_090 0.0546812144 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
4 Hb_000834_270 0.0562905167 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
5 Hb_004586_320 0.0569662945 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
6 Hb_000574_480 0.060464757 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
7 Hb_000173_220 0.0650501683 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
8 Hb_001998_050 0.067935002 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
9 Hb_002963_010 0.0687754963 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
10 Hb_148200_010 0.0688519199 - - hypothetical protein 33 [Hevea brasiliensis]
11 Hb_001083_020 0.0694611447 - - -
12 Hb_000146_020 0.0696815367 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
13 Hb_001360_050 0.0701897063 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
14 Hb_000230_510 0.0706046699 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
15 Hb_000347_410 0.0723726146 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
16 Hb_004724_340 0.0727389571 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
17 Hb_017948_010 0.0727876661 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
18 Hb_000240_090 0.0763662857 - - Rab5 [Hevea brasiliensis]
19 Hb_002918_200 0.0767338827 - - -
20 Hb_007943_090 0.0768760244 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]

Gene co-expression network

sample Hb_012675_060 Hb_012675_060 Hb_012753_160 Hb_012753_160 Hb_012675_060--Hb_012753_160 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_000834_270 Hb_000834_270 Hb_012675_060--Hb_000834_270 Hb_004586_320 Hb_004586_320 Hb_012675_060--Hb_004586_320 Hb_000574_480 Hb_000574_480 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220 Hb_001140_060 Hb_001140_060 Hb_012753_160--Hb_001140_060 Hb_000072_080 Hb_000072_080 Hb_012753_160--Hb_000072_080 Hb_001998_050 Hb_001998_050 Hb_012753_160--Hb_001998_050 Hb_003455_040 Hb_003455_040 Hb_012753_160--Hb_003455_040 Hb_012753_160--Hb_000574_480 Hb_010080_090--Hb_000834_270 Hb_004724_340 Hb_004724_340 Hb_010080_090--Hb_004724_340 Hb_002963_010 Hb_002963_010 Hb_010080_090--Hb_002963_010 Hb_010080_090--Hb_004586_320 Hb_001360_050 Hb_001360_050 Hb_010080_090--Hb_001360_050 Hb_000146_020 Hb_000146_020 Hb_000834_270--Hb_000146_020 Hb_000834_270--Hb_002963_010 Hb_002918_200 Hb_002918_200 Hb_000834_270--Hb_002918_200 Hb_001722_100 Hb_001722_100 Hb_000834_270--Hb_001722_100 Hb_003656_070 Hb_003656_070 Hb_004586_320--Hb_003656_070 Hb_007943_090 Hb_007943_090 Hb_004586_320--Hb_007943_090 Hb_004586_320--Hb_001998_050 Hb_004586_320--Hb_000574_480 Hb_148200_010 Hb_148200_010 Hb_004586_320--Hb_148200_010 Hb_000574_480--Hb_003656_070 Hb_000574_480--Hb_001998_050 Hb_000574_480--Hb_002963_010 Hb_008173_090 Hb_008173_090 Hb_000574_480--Hb_008173_090 Hb_000574_480--Hb_000173_220 Hb_002027_210 Hb_002027_210 Hb_000173_220--Hb_002027_210 Hb_001191_090 Hb_001191_090 Hb_000173_220--Hb_001191_090 Hb_017948_010 Hb_017948_010 Hb_000173_220--Hb_017948_010 Hb_000173_220--Hb_003455_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.90086 3.96648 3.26542 4.52116 7.48688 7.84428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.001 20.4649 15.1596 7.83129 4.91308

CAGE analysis