Hb_001140_060

Information

Type -
Description -
Location Contig1140: 125469-128949
Sequence    

Annotation

kegg
ID pmum:103333232
description ADP-ribosylation factor-related protein 1
nr
ID XP_008234264.1
description PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
swissprot
ID Q63055
description ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1
trembl
ID M5X0L7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011585mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-related protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04174: 125496-129136 , PASA_asmbl_04176: 125471-128902 , PASA_asmbl_04178: 125630-127126 , PASA_asmbl_04179: 127887-128284
cDNA
(Sanger)
(ID:Location)		 020_B06.ab1: 125496-128648

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_060 0.0 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
2 Hb_006117_070 0.0506211357 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
3 Hb_012753_160 0.0614973788 - - ara4-interacting protein, putative [Ricinus communis]
4 Hb_008300_010 0.0663786366 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
5 Hb_000479_010 0.0682136194 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
6 Hb_101705_030 0.076199012 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
7 Hb_008878_030 0.0776430781 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
8 Hb_129204_030 0.0792510755 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
9 Hb_002874_190 0.0796092025 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
10 Hb_000240_090 0.0802514428 - - Rab5 [Hevea brasiliensis]
11 Hb_002864_050 0.0804225541 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
12 Hb_000230_510 0.0804736973 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
13 Hb_005289_030 0.0816278284 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
14 Hb_000167_140 0.0821230722 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
15 Hb_153112_020 0.0825307732 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
16 Hb_000431_010 0.0827051295 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
17 Hb_158467_010 0.0831511268 - - transporter, putative [Ricinus communis]
18 Hb_003632_010 0.0835854746 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001512_030 0.0838478018 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
20 Hb_000979_230 0.0838491608 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001140_060 Hb_001140_060 Hb_006117_070 Hb_006117_070 Hb_001140_060--Hb_006117_070 Hb_012753_160 Hb_012753_160 Hb_001140_060--Hb_012753_160 Hb_008300_010 Hb_008300_010 Hb_001140_060--Hb_008300_010 Hb_000479_010 Hb_000479_010 Hb_001140_060--Hb_000479_010 Hb_101705_030 Hb_101705_030 Hb_001140_060--Hb_101705_030 Hb_008878_030 Hb_008878_030 Hb_001140_060--Hb_008878_030 Hb_005289_030 Hb_005289_030 Hb_006117_070--Hb_005289_030 Hb_000230_510 Hb_000230_510 Hb_006117_070--Hb_000230_510 Hb_006541_030 Hb_006541_030 Hb_006117_070--Hb_006541_030 Hb_006117_070--Hb_012753_160 Hb_006117_070--Hb_101705_030 Hb_012675_060 Hb_012675_060 Hb_012753_160--Hb_012675_060 Hb_000072_080 Hb_000072_080 Hb_012753_160--Hb_000072_080 Hb_001998_050 Hb_001998_050 Hb_012753_160--Hb_001998_050 Hb_003455_040 Hb_003455_040 Hb_012753_160--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_012753_160--Hb_000574_480 Hb_009486_130 Hb_009486_130 Hb_008300_010--Hb_009486_130 Hb_000431_010 Hb_000431_010 Hb_008300_010--Hb_000431_010 Hb_008300_010--Hb_006117_070 Hb_008300_010--Hb_000479_010 Hb_010174_020 Hb_010174_020 Hb_008300_010--Hb_010174_020 Hb_000479_010--Hb_012753_160 Hb_006031_020 Hb_006031_020 Hb_000479_010--Hb_006031_020 Hb_011867_010 Hb_011867_010 Hb_000479_010--Hb_011867_010 Hb_021409_030 Hb_021409_030 Hb_000479_010--Hb_021409_030 Hb_002874_190 Hb_002874_190 Hb_101705_030--Hb_002874_190 Hb_002864_050 Hb_002864_050 Hb_101705_030--Hb_002864_050 Hb_158467_010 Hb_158467_010 Hb_101705_030--Hb_158467_010 Hb_001604_080 Hb_001604_080 Hb_101705_030--Hb_001604_080 Hb_000331_080 Hb_000331_080 Hb_008878_030--Hb_000331_080 Hb_003050_080 Hb_003050_080 Hb_008878_030--Hb_003050_080 Hb_002686_020 Hb_002686_020 Hb_008878_030--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_008878_030--Hb_000832_140 Hb_004048_110 Hb_004048_110 Hb_008878_030--Hb_004048_110 Hb_004837_140 Hb_004837_140 Hb_008878_030--Hb_004837_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.2151 20.3176 32.2738 44.7228 51.2324 61.5278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.5997 133.754 106.739 37.06 35.1544

CAGE analysis