Hb_000230_510

Information

Type -
Description -
Location Contig230: 482458-486248
Sequence    

Annotation

kegg
ID rcu:RCOM_0678110
description 60S ribosomal protein L34, putative
nr
ID XP_012069515.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
swissprot
ID P0C8Q9
description Uncharacterized protein At5g19025 OS=Arabidopsis thaliana GN=At5g19025 PE=2 SV=3
trembl
ID B9RSR8
description 60S ribosomal protein L34, putative OS=Ricinus communis GN=RCOM_0678110 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24075: 482569-485863 , PASA_asmbl_24078: 484707-484981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_510 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
2 Hb_005289_030 0.0622458249 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
3 Hb_006117_070 0.0658727581 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
4 Hb_001083_020 0.0668071909 - - -
5 Hb_000384_100 0.0680417715 - - hydrolase, putative [Ricinus communis]
6 Hb_012675_060 0.0706046699 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
7 Hb_012753_160 0.0715837787 - - ara4-interacting protein, putative [Ricinus communis]
8 Hb_000479_090 0.0750033404 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
9 Hb_000173_220 0.075589533 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
10 Hb_000574_480 0.0779396742 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
11 Hb_027625_010 0.0793298099 - - PREDICTED: protein sym-1-like [Jatropha curcas]
12 Hb_001140_060 0.0804736973 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
13 Hb_024714_010 0.0812702184 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
14 Hb_001360_050 0.0838754473 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
15 Hb_000058_060 0.0839968581 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
16 Hb_005568_120 0.0854269783 - - Prephenate dehydratase [Hevea brasiliensis]
17 Hb_000072_080 0.0857338771 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
18 Hb_017948_010 0.0858251696 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
19 Hb_002759_060 0.0862359555 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
20 Hb_000373_120 0.0866603605 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_510 Hb_000230_510 Hb_005289_030 Hb_005289_030 Hb_000230_510--Hb_005289_030 Hb_006117_070 Hb_006117_070 Hb_000230_510--Hb_006117_070 Hb_001083_020 Hb_001083_020 Hb_000230_510--Hb_001083_020 Hb_000384_100 Hb_000384_100 Hb_000230_510--Hb_000384_100 Hb_012675_060 Hb_012675_060 Hb_000230_510--Hb_012675_060 Hb_012753_160 Hb_012753_160 Hb_000230_510--Hb_012753_160 Hb_005289_030--Hb_006117_070 Hb_004254_120 Hb_004254_120 Hb_005289_030--Hb_004254_120 Hb_000058_060 Hb_000058_060 Hb_005289_030--Hb_000058_060 Hb_010504_020 Hb_010504_020 Hb_005289_030--Hb_010504_020 Hb_002759_060 Hb_002759_060 Hb_005289_030--Hb_002759_060 Hb_001140_060 Hb_001140_060 Hb_006117_070--Hb_001140_060 Hb_006541_030 Hb_006541_030 Hb_006117_070--Hb_006541_030 Hb_006117_070--Hb_012753_160 Hb_101705_030 Hb_101705_030 Hb_006117_070--Hb_101705_030 Hb_001775_110 Hb_001775_110 Hb_001083_020--Hb_001775_110 Hb_017948_010 Hb_017948_010 Hb_001083_020--Hb_017948_010 Hb_001083_020--Hb_012675_060 Hb_001360_050 Hb_001360_050 Hb_001083_020--Hb_001360_050 Hb_009393_210 Hb_009393_210 Hb_001083_020--Hb_009393_210 Hb_000479_090 Hb_000479_090 Hb_000384_100--Hb_000479_090 Hb_000059_370 Hb_000059_370 Hb_000384_100--Hb_000059_370 Hb_010068_020 Hb_010068_020 Hb_000384_100--Hb_010068_020 Hb_002183_090 Hb_002183_090 Hb_000384_100--Hb_002183_090 Hb_000920_110 Hb_000920_110 Hb_000384_100--Hb_000920_110 Hb_012675_060--Hb_012753_160 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_000834_270 Hb_000834_270 Hb_012675_060--Hb_000834_270 Hb_004586_320 Hb_004586_320 Hb_012675_060--Hb_004586_320 Hb_000574_480 Hb_000574_480 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220 Hb_012753_160--Hb_001140_060 Hb_000072_080 Hb_000072_080 Hb_012753_160--Hb_000072_080 Hb_001998_050 Hb_001998_050 Hb_012753_160--Hb_001998_050 Hb_003455_040 Hb_003455_040 Hb_012753_160--Hb_003455_040 Hb_012753_160--Hb_000574_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7113 6.07704 3.99625 9.69864 9.39871 13.3839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9638 29.0179 20.3603 9.46954 10.306

CAGE analysis