Hb_006117_070

Information

Type -
Description -
Location Contig6117: 49768-51042
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12030g
description POPTRDRAFT_249871; hypothetical protein
nr
ID XP_012079043.1
description PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
swissprot
ID P43935
description Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1
trembl
ID A0A067KIY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51005: 49667-50199 , PASA_asmbl_51006: 50696-50952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006117_070 0.0 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
2 Hb_001140_060 0.0506211357 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
3 Hb_005289_030 0.0549182707 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
4 Hb_000230_510 0.0658727581 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
5 Hb_006541_030 0.0719255746 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
6 Hb_012753_160 0.0727562787 - - ara4-interacting protein, putative [Ricinus communis]
7 Hb_101705_030 0.0731039155 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
8 Hb_008300_010 0.0762038197 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
9 Hb_024714_010 0.0762302544 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
10 Hb_003632_010 0.0776241605 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002759_060 0.0789327147 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
12 Hb_000329_310 0.0821261094 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
13 Hb_007904_260 0.0833050736 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
14 Hb_009666_040 0.0833726885 - - glutathione transferase, putative [Ricinus communis]
15 Hb_009486_130 0.0835355293 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
16 Hb_001512_030 0.0854584754 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
17 Hb_004254_120 0.0859797563 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000979_230 0.0860500282 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
19 Hb_000840_030 0.0863781101 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
20 Hb_000431_010 0.0865343779 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]

Gene co-expression network

sample Hb_006117_070 Hb_006117_070 Hb_001140_060 Hb_001140_060 Hb_006117_070--Hb_001140_060 Hb_005289_030 Hb_005289_030 Hb_006117_070--Hb_005289_030 Hb_000230_510 Hb_000230_510 Hb_006117_070--Hb_000230_510 Hb_006541_030 Hb_006541_030 Hb_006117_070--Hb_006541_030 Hb_012753_160 Hb_012753_160 Hb_006117_070--Hb_012753_160 Hb_101705_030 Hb_101705_030 Hb_006117_070--Hb_101705_030 Hb_001140_060--Hb_012753_160 Hb_008300_010 Hb_008300_010 Hb_001140_060--Hb_008300_010 Hb_000479_010 Hb_000479_010 Hb_001140_060--Hb_000479_010 Hb_001140_060--Hb_101705_030 Hb_008878_030 Hb_008878_030 Hb_001140_060--Hb_008878_030 Hb_005289_030--Hb_000230_510 Hb_004254_120 Hb_004254_120 Hb_005289_030--Hb_004254_120 Hb_000058_060 Hb_000058_060 Hb_005289_030--Hb_000058_060 Hb_010504_020 Hb_010504_020 Hb_005289_030--Hb_010504_020 Hb_002759_060 Hb_002759_060 Hb_005289_030--Hb_002759_060 Hb_001083_020 Hb_001083_020 Hb_000230_510--Hb_001083_020 Hb_000384_100 Hb_000384_100 Hb_000230_510--Hb_000384_100 Hb_012675_060 Hb_012675_060 Hb_000230_510--Hb_012675_060 Hb_000230_510--Hb_012753_160 Hb_007380_070 Hb_007380_070 Hb_006541_030--Hb_007380_070 Hb_005539_350 Hb_005539_350 Hb_006541_030--Hb_005539_350 Hb_000243_030 Hb_000243_030 Hb_006541_030--Hb_000243_030 Hb_000398_180 Hb_000398_180 Hb_006541_030--Hb_000398_180 Hb_000529_190 Hb_000529_190 Hb_006541_030--Hb_000529_190 Hb_002874_190 Hb_002874_190 Hb_006541_030--Hb_002874_190 Hb_012753_160--Hb_012675_060 Hb_000072_080 Hb_000072_080 Hb_012753_160--Hb_000072_080 Hb_001998_050 Hb_001998_050 Hb_012753_160--Hb_001998_050 Hb_003455_040 Hb_003455_040 Hb_012753_160--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_012753_160--Hb_000574_480 Hb_101705_030--Hb_002874_190 Hb_002864_050 Hb_002864_050 Hb_101705_030--Hb_002864_050 Hb_158467_010 Hb_158467_010 Hb_101705_030--Hb_158467_010 Hb_001604_080 Hb_001604_080 Hb_101705_030--Hb_001604_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4365 3.72314 4.46502 6.78332 6.95789 12.7176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4548 20.1741 17.3825 5.74826 6.56985

CAGE analysis