Hb_007380_070

Information

Type transcription factor
Description TF Family: G2-like
Location Contig7380: 91980-95993
Sequence    

Annotation

kegg
ID rcu:RCOM_0820580
description transcription factor, putative
nr
ID XP_002525238.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8GUN5
description Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
trembl
ID B9SGW9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0820580 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein phr1-like 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56233: 91984-101103 , PASA_asmbl_56235: 96042-96505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007380_070 0.0 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
2 Hb_006541_030 0.0569123458 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
3 Hb_001671_020 0.0572754931 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
4 Hb_000398_180 0.0577663187 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
5 Hb_003929_160 0.0623946747 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
6 Hb_005539_350 0.0624695204 - - conserved hypothetical protein [Ricinus communis]
7 Hb_028872_140 0.0673861438 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
8 Hb_011689_080 0.0720341219 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
9 Hb_000567_260 0.0744055014 - - BnaA09g41440D [Brassica napus]
10 Hb_007951_050 0.0752272501 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_010504_020 0.0759635985 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_003376_040 0.0760316245 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
13 Hb_118707_030 0.0776165647 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
14 Hb_189003_080 0.0777194698 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
15 Hb_005063_040 0.0779995759 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
16 Hb_003001_120 0.0796837626 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
17 Hb_125000_010 0.0819679589 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
18 Hb_003540_040 0.0823538275 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
19 Hb_004324_310 0.0825309861 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000840_030 0.0845558157 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007380_070 Hb_007380_070 Hb_006541_030 Hb_006541_030 Hb_007380_070--Hb_006541_030 Hb_001671_020 Hb_001671_020 Hb_007380_070--Hb_001671_020 Hb_000398_180 Hb_000398_180 Hb_007380_070--Hb_000398_180 Hb_003929_160 Hb_003929_160 Hb_007380_070--Hb_003929_160 Hb_005539_350 Hb_005539_350 Hb_007380_070--Hb_005539_350 Hb_028872_140 Hb_028872_140 Hb_007380_070--Hb_028872_140 Hb_006541_030--Hb_005539_350 Hb_000243_030 Hb_000243_030 Hb_006541_030--Hb_000243_030 Hb_006541_030--Hb_000398_180 Hb_000529_190 Hb_000529_190 Hb_006541_030--Hb_000529_190 Hb_002874_190 Hb_002874_190 Hb_006541_030--Hb_002874_190 Hb_000567_260 Hb_000567_260 Hb_001671_020--Hb_000567_260 Hb_055062_030 Hb_055062_030 Hb_001671_020--Hb_055062_030 Hb_002603_100 Hb_002603_100 Hb_001671_020--Hb_002603_100 Hb_189003_080 Hb_189003_080 Hb_001671_020--Hb_189003_080 Hb_001243_050 Hb_001243_050 Hb_001671_020--Hb_001243_050 Hb_000398_180--Hb_028872_140 Hb_001377_290 Hb_001377_290 Hb_000398_180--Hb_001377_290 Hb_004195_160 Hb_004195_160 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_003001_120 Hb_003001_120 Hb_003929_160--Hb_003001_120 Hb_004109_090 Hb_004109_090 Hb_003929_160--Hb_004109_090 Hb_003929_160--Hb_005539_350 Hb_005663_060 Hb_005663_060 Hb_003929_160--Hb_005663_060 Hb_000926_280 Hb_000926_280 Hb_003929_160--Hb_000926_280 Hb_001269_680 Hb_001269_680 Hb_005539_350--Hb_001269_680 Hb_005539_350--Hb_002874_190 Hb_002007_060 Hb_002007_060 Hb_005539_350--Hb_002007_060 Hb_000840_030 Hb_000840_030 Hb_005539_350--Hb_000840_030 Hb_001454_210 Hb_001454_210 Hb_028872_140--Hb_001454_210 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_009111_050 Hb_009111_050 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.3155 17.0306 14.4579 14.7104 31.4351 52.1798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.9732 44.562 45.7849 13.4879 14.9899

CAGE analysis