Hb_001243_050

Information

Type -
Description -
Location Contig1243: 56578-58973
Sequence    

Annotation

kegg
ID rcu:RCOM_0738700
description translation initiation factor, putative
nr
ID XP_012084371.1
description PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19582 PE=4 SV=1
Gene Ontology
ID GO:0008152
description translation initiation

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07391: 56578-59062 , PASA_asmbl_07392: 57822-57956 , PASA_asmbl_07393: 56770-57912 , PASA_asmbl_07394: 56823-57094 , PASA_asmbl_07395: 57403-57671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001243_050 0.0 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
2 Hb_000376_050 0.0627335232 - - polyadenylate-binding protein, putative [Ricinus communis]
3 Hb_002603_100 0.0646892482 - - ATATH9, putative [Ricinus communis]
4 Hb_006447_010 0.06615184 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
5 Hb_001671_020 0.0684161312 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
6 Hb_022250_040 0.0690944765 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
7 Hb_002307_030 0.0702227442 - - 40S ribosomal protein S15D [Hevea brasiliensis]
8 Hb_000975_290 0.0714444041 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
9 Hb_000956_010 0.0725822739 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
10 Hb_021650_030 0.0754838439 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
11 Hb_005686_110 0.0756688652 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
12 Hb_000371_080 0.0767899014 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
13 Hb_004662_030 0.0771513014 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
14 Hb_002078_450 0.0775375741 - - nuclear transport factor, putative [Ricinus communis]
15 Hb_003540_040 0.0793882108 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
16 Hb_001427_120 0.080150183 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
17 Hb_002097_110 0.0809837284 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_009711_030 0.0810641058 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
19 Hb_004899_320 0.0820793939 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
20 Hb_125000_010 0.0838578424 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001243_050 Hb_001243_050 Hb_000376_050 Hb_000376_050 Hb_001243_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_001243_050--Hb_002603_100 Hb_006447_010 Hb_006447_010 Hb_001243_050--Hb_006447_010 Hb_001671_020 Hb_001671_020 Hb_001243_050--Hb_001671_020 Hb_022250_040 Hb_022250_040 Hb_001243_050--Hb_022250_040 Hb_002307_030 Hb_002307_030 Hb_001243_050--Hb_002307_030 Hb_000956_010 Hb_000956_010 Hb_000376_050--Hb_000956_010 Hb_000376_050--Hb_002603_100 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_023386_080 Hb_023386_080 Hb_002603_100--Hb_023386_080 Hb_002603_100--Hb_022250_040 Hb_002603_100--Hb_000956_010 Hb_002603_100--Hb_001671_020 Hb_001246_100 Hb_001246_100 Hb_006447_010--Hb_001246_100 Hb_000442_160 Hb_000442_160 Hb_006447_010--Hb_000442_160 Hb_001030_120 Hb_001030_120 Hb_006447_010--Hb_001030_120 Hb_133271_020 Hb_133271_020 Hb_006447_010--Hb_133271_020 Hb_012340_030 Hb_012340_030 Hb_006447_010--Hb_012340_030 Hb_000567_260 Hb_000567_260 Hb_001671_020--Hb_000567_260 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_055062_030 Hb_055062_030 Hb_001671_020--Hb_055062_030 Hb_189003_080 Hb_189003_080 Hb_001671_020--Hb_189003_080 Hb_009711_030 Hb_009711_030 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_022250_040--Hb_004662_030 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010 Hb_002374_490 Hb_002374_490 Hb_002307_030--Hb_002374_490 Hb_000156_130 Hb_000156_130 Hb_002307_030--Hb_000156_130 Hb_023732_070 Hb_023732_070 Hb_002307_030--Hb_023732_070 Hb_002311_350 Hb_002311_350 Hb_002307_030--Hb_002311_350 Hb_000977_080 Hb_000977_080 Hb_002307_030--Hb_000977_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.3388 24.3007 12.6112 14.3872 51.833 83.7744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.2063 83.1771 69.2177 18.6452 10.753

CAGE analysis