Hb_023386_080

Information

Type -
Description -
Location Contig23386: 53379-58009
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07470g
description POPTRDRAFT_817164; hypothetical protein
nr
ID XP_012069981.1
description PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
swissprot
ID Q9SRQ3
description Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana GN=PEX19-1 PE=1 SV=1
trembl
ID A0A067KUI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03402 PE=4 SV=1
Gene Ontology
ID GO:0005777
description peroxisome biogenesis protein 19-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24564: 53426-57877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023386_080 0.0 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
2 Hb_002603_100 0.0550689564 - - ATATH9, putative [Ricinus communis]
3 Hb_000329_040 0.0590677165 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
4 Hb_000634_100 0.0665596506 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
5 Hb_044662_070 0.0676449598 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
6 Hb_000956_010 0.0678683753 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
7 Hb_000376_050 0.0702667178 - - polyadenylate-binding protein, putative [Ricinus communis]
8 Hb_011794_070 0.0726809216 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
9 Hb_003018_200 0.0753422378 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
10 Hb_001427_120 0.0757646015 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
11 Hb_000883_050 0.075848954 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
12 Hb_022250_040 0.0759188871 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
13 Hb_000412_110 0.077113675 - - Rop4 [Hevea brasiliensis]
14 Hb_021650_030 0.0782901881 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
15 Hb_003376_120 0.0788898254 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
16 Hb_007672_010 0.079319873 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
17 Hb_000260_080 0.080642254 - - thioredoxin H-type 1 [Hevea brasiliensis]
18 Hb_008289_060 0.0809994853 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
19 Hb_001257_080 0.0820773236 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000056_340 0.0832805295 - - 60S ribosomal protein L34A [Hevea brasiliensis]

Gene co-expression network

sample Hb_023386_080 Hb_023386_080 Hb_002603_100 Hb_002603_100 Hb_023386_080--Hb_002603_100 Hb_000329_040 Hb_000329_040 Hb_023386_080--Hb_000329_040 Hb_000634_100 Hb_000634_100 Hb_023386_080--Hb_000634_100 Hb_044662_070 Hb_044662_070 Hb_023386_080--Hb_044662_070 Hb_000956_010 Hb_000956_010 Hb_023386_080--Hb_000956_010 Hb_000376_050 Hb_000376_050 Hb_023386_080--Hb_000376_050 Hb_002603_100--Hb_000376_050 Hb_022250_040 Hb_022250_040 Hb_002603_100--Hb_022250_040 Hb_002603_100--Hb_000956_010 Hb_001243_050 Hb_001243_050 Hb_002603_100--Hb_001243_050 Hb_001671_020 Hb_001671_020 Hb_002603_100--Hb_001671_020 Hb_000260_080 Hb_000260_080 Hb_000329_040--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000329_040--Hb_011794_070 Hb_000329_040--Hb_000376_050 Hb_000703_140 Hb_000703_140 Hb_000329_040--Hb_000703_140 Hb_004899_320 Hb_004899_320 Hb_000329_040--Hb_004899_320 Hb_003376_120 Hb_003376_120 Hb_000634_100--Hb_003376_120 Hb_000634_100--Hb_000329_040 Hb_005333_130 Hb_005333_130 Hb_000634_100--Hb_005333_130 Hb_003408_030 Hb_003408_030 Hb_000634_100--Hb_003408_030 Hb_000634_100--Hb_044662_070 Hb_004108_230 Hb_004108_230 Hb_044662_070--Hb_004108_230 Hb_007924_020 Hb_007924_020 Hb_044662_070--Hb_007924_020 Hb_003175_040 Hb_003175_040 Hb_044662_070--Hb_003175_040 Hb_003408_020 Hb_003408_020 Hb_044662_070--Hb_003408_020 Hb_044662_070--Hb_003376_120 Hb_001427_120 Hb_001427_120 Hb_000956_010--Hb_001427_120 Hb_000956_010--Hb_000376_050 Hb_006693_030 Hb_006693_030 Hb_000956_010--Hb_006693_030 Hb_000956_010--Hb_022250_040 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_000376_050--Hb_001427_120 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.0177 26.1229 25.941 21.0773 74.9862 72.9352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
114.198 119.617 117.649 24.2262 12.7979

CAGE analysis