Hb_000329_040

Information

Type -
Description -
Location Contig329: 22996-24306
Sequence    

Annotation

kegg
ID tcc:TCM_005530
description UDP-D-glucuronate 4-epimerase 3
nr
ID XP_012083592.1
description PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
swissprot
ID O81312
description UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1
trembl
ID A0A067JY29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14538 PE=4 SV=1
Gene Ontology
ID GO:0005794
description udp-glucuronate 4-epimerase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_040 0.0 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
2 Hb_000260_080 0.0575966795 - - thioredoxin H-type 1 [Hevea brasiliensis]
3 Hb_011794_070 0.057660421 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
4 Hb_023386_080 0.0590677165 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
5 Hb_000376_050 0.0642208032 - - polyadenylate-binding protein, putative [Ricinus communis]
6 Hb_000703_140 0.0718079746 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
7 Hb_004899_320 0.074493875 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
8 Hb_000956_010 0.076033397 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
9 Hb_001427_120 0.0793830142 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
10 Hb_002603_100 0.0800562317 - - ATATH9, putative [Ricinus communis]
11 Hb_001008_060 0.0801330023 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
12 Hb_000634_100 0.0803773181 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
13 Hb_000883_050 0.0808070906 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
14 Hb_000412_110 0.0840691613 - - Rop4 [Hevea brasiliensis]
15 Hb_008289_060 0.0845084025 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
16 Hb_022250_040 0.0850344385 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
17 Hb_009711_030 0.0850448244 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
18 Hb_000975_290 0.0851568537 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
19 Hb_006693_030 0.0873839098 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
20 Hb_003777_180 0.0874000989 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_040 Hb_000329_040 Hb_000260_080 Hb_000260_080 Hb_000329_040--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000329_040--Hb_011794_070 Hb_023386_080 Hb_023386_080 Hb_000329_040--Hb_023386_080 Hb_000376_050 Hb_000376_050 Hb_000329_040--Hb_000376_050 Hb_000703_140 Hb_000703_140 Hb_000329_040--Hb_000703_140 Hb_004899_320 Hb_004899_320 Hb_000329_040--Hb_004899_320 Hb_000260_080--Hb_000703_140 Hb_000260_080--Hb_011794_070 Hb_000883_050 Hb_000883_050 Hb_000260_080--Hb_000883_050 Hb_000025_530 Hb_000025_530 Hb_000260_080--Hb_000025_530 Hb_000531_020 Hb_000531_020 Hb_000260_080--Hb_000531_020 Hb_011794_070--Hb_000703_140 Hb_011794_070--Hb_000883_050 Hb_022250_040 Hb_022250_040 Hb_011794_070--Hb_022250_040 Hb_004108_230 Hb_004108_230 Hb_011794_070--Hb_004108_230 Hb_002603_100 Hb_002603_100 Hb_023386_080--Hb_002603_100 Hb_000634_100 Hb_000634_100 Hb_023386_080--Hb_000634_100 Hb_044662_070 Hb_044662_070 Hb_023386_080--Hb_044662_070 Hb_000956_010 Hb_000956_010 Hb_023386_080--Hb_000956_010 Hb_023386_080--Hb_000376_050 Hb_000376_050--Hb_000956_010 Hb_000376_050--Hb_002603_100 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_009711_030 Hb_009711_030 Hb_000703_140--Hb_009711_030 Hb_000703_140--Hb_000376_050 Hb_000703_140--Hb_000883_050 Hb_005488_010 Hb_005488_010 Hb_004899_320--Hb_005488_010 Hb_000836_070 Hb_000836_070 Hb_004899_320--Hb_000836_070 Hb_006693_030 Hb_006693_030 Hb_004899_320--Hb_006693_030 Hb_001366_200 Hb_001366_200 Hb_004899_320--Hb_001366_200 Hb_004899_320--Hb_000956_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.5463 1.32527 1.12509 1.67024 4.46465 4.68418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.23139 7.86233 6.96725 1.48984 1.22371

CAGE analysis