Hb_000883_050

Information

Type -
Description -
Location Contig883: 60741-62024
Sequence    

Annotation

kegg
ID sot:102601623
description 60S ribosomal protein L37a-like
nr
ID XP_006354681.1
description PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
swissprot
ID Q9XHE4
description 60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1
trembl
ID M5WNW1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1
Gene Ontology
ID GO:0022625
description 60s ribosomal protein l37a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61452: 60747-62972 , PASA_asmbl_61453: 61274-61569 , PASA_asmbl_61454: 62552-62792
cDNA
(Sanger)
(ID:Location)		 005_K16.ab1: 60750-62965 , 006_C16.ab1: 60800-62965 , 009_G16.ab1: 60750-62968 , 021_A15.ab1: 60793-62966 , 022_E14.ab1: 60771-62964 , 033_N08.ab1: 60750-62966

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000883_050 0.0 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
2 Hb_011794_070 0.0615943213 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
3 Hb_001109_020 0.0630307863 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003927_130 0.0663645972 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
5 Hb_001427_120 0.0683726668 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
6 Hb_000703_140 0.0685833368 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
7 Hb_000260_080 0.0691205439 - - thioredoxin H-type 1 [Hevea brasiliensis]
8 Hb_000086_070 0.0707133653 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
9 Hb_000205_270 0.0720745984 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
10 Hb_000531_020 0.073276092 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
11 Hb_000956_010 0.0743371201 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
12 Hb_023386_080 0.075848954 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
13 Hb_000376_050 0.0764647688 - - polyadenylate-binding protein, putative [Ricinus communis]
14 Hb_008289_060 0.0789400311 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
15 Hb_004899_320 0.0795188726 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
16 Hb_000329_040 0.0808070906 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
17 Hb_002603_100 0.0812232466 - - ATATH9, putative [Ricinus communis]
18 Hb_007672_010 0.0831448447 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
19 Hb_007101_130 0.0833492313 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001383_060 0.0833723061 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_000883_050 Hb_000883_050 Hb_011794_070 Hb_011794_070 Hb_000883_050--Hb_011794_070 Hb_001109_020 Hb_001109_020 Hb_000883_050--Hb_001109_020 Hb_003927_130 Hb_003927_130 Hb_000883_050--Hb_003927_130 Hb_001427_120 Hb_001427_120 Hb_000883_050--Hb_001427_120 Hb_000703_140 Hb_000703_140 Hb_000883_050--Hb_000703_140 Hb_000260_080 Hb_000260_080 Hb_000883_050--Hb_000260_080 Hb_000329_040 Hb_000329_040 Hb_011794_070--Hb_000329_040 Hb_011794_070--Hb_000260_080 Hb_011794_070--Hb_000703_140 Hb_022250_040 Hb_022250_040 Hb_011794_070--Hb_022250_040 Hb_004108_230 Hb_004108_230 Hb_011794_070--Hb_004108_230 Hb_001829_060 Hb_001829_060 Hb_001109_020--Hb_001829_060 Hb_000046_110 Hb_000046_110 Hb_001109_020--Hb_000046_110 Hb_001109_020--Hb_003927_130 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_001383_060 Hb_001383_060 Hb_003927_130--Hb_001383_060 Hb_003927_130--Hb_000086_070 Hb_003927_130--Hb_001829_060 Hb_001433_050 Hb_001433_050 Hb_003927_130--Hb_001433_050 Hb_000956_010 Hb_000956_010 Hb_001427_120--Hb_000956_010 Hb_001718_100 Hb_001718_100 Hb_001427_120--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_001427_120--Hb_000086_570 Hb_000376_050 Hb_000376_050 Hb_001427_120--Hb_000376_050 Hb_071736_020 Hb_071736_020 Hb_001427_120--Hb_071736_020 Hb_001427_120--Hb_022250_040 Hb_000703_140--Hb_000260_080 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_009711_030 Hb_009711_030 Hb_000703_140--Hb_009711_030 Hb_000703_140--Hb_000376_050 Hb_000260_080--Hb_000329_040 Hb_000025_530 Hb_000025_530 Hb_000260_080--Hb_000025_530 Hb_000531_020 Hb_000531_020 Hb_000260_080--Hb_000531_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
804.211 192.824 284.909 236.421 664.848 964.286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1025.08 1585.84 1224.01 318.423 156.84

CAGE analysis