Hb_000025_530

Information

Type -
Description -
Location Contig25: 513483-517237
Sequence    

Annotation

kegg
ID cam:101494756
description uncharacterized LOC101494756
nr
ID XP_012074490.1
description PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
swissprot
ID A4QNF3
description Reactive oxygen species modulator 1 OS=Xenopus tropicalis GN=romo1 PE=3 SV=1
trembl
ID A0A0D2UW89
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G214000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26133: 513541-517364 , PASA_asmbl_26135: 513782-514040 , PASA_asmbl_26137: 515279-515529
cDNA
(Sanger)
(ID:Location)		 027_O11.ab1: 513580-517357 , 049_N11.ab1: 513605-517364

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_530 0.0 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
2 Hb_000531_020 0.0601039934 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
3 Hb_000260_080 0.0713531519 - - thioredoxin H-type 1 [Hevea brasiliensis]
4 Hb_002893_060 0.0721655949 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
5 Hb_000703_140 0.072873414 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
6 Hb_000970_010 0.0756079835 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
7 Hb_002477_240 0.0775204212 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
8 Hb_000260_050 0.083453859 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
9 Hb_001828_090 0.0838254456 - - prohibitin, putative [Ricinus communis]
10 Hb_000487_250 0.0847758645 - - 60S ribosomal protein L27e, putative [Ricinus communis]
11 Hb_001818_020 0.0853374673 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
12 Hb_004899_220 0.0855171017 - - PREDICTED: adrenodoxin-like protein 2, mitochondrial [Jatropha curcas]
13 Hb_000190_060 0.0879496061 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
14 Hb_010261_060 0.087978993 - - unnamed protein product [Coffea canephora]
15 Hb_000545_150 0.0893045133 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
16 Hb_000483_160 0.0906660069 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
17 Hb_027472_180 0.0907524988 - - hypothetical protein L484_016229 [Morus notabilis]
18 Hb_005701_020 0.090944501 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
19 Hb_000417_110 0.0911028755 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
20 Hb_004738_080 0.0918564372 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_000025_530 Hb_000025_530 Hb_000531_020 Hb_000531_020 Hb_000025_530--Hb_000531_020 Hb_000260_080 Hb_000260_080 Hb_000025_530--Hb_000260_080 Hb_002893_060 Hb_002893_060 Hb_000025_530--Hb_002893_060 Hb_000703_140 Hb_000703_140 Hb_000025_530--Hb_000703_140 Hb_000970_010 Hb_000970_010 Hb_000025_530--Hb_000970_010 Hb_002477_240 Hb_002477_240 Hb_000025_530--Hb_002477_240 Hb_000531_020--Hb_000260_080 Hb_000883_050 Hb_000883_050 Hb_000531_020--Hb_000883_050 Hb_000531_020--Hb_000703_140 Hb_000260_050 Hb_000260_050 Hb_000531_020--Hb_000260_050 Hb_001828_090 Hb_001828_090 Hb_000531_020--Hb_001828_090 Hb_000260_080--Hb_000703_140 Hb_000329_040 Hb_000329_040 Hb_000260_080--Hb_000329_040 Hb_011794_070 Hb_011794_070 Hb_000260_080--Hb_011794_070 Hb_000260_080--Hb_000883_050 Hb_000465_060 Hb_000465_060 Hb_002893_060--Hb_000465_060 Hb_003001_060 Hb_003001_060 Hb_002893_060--Hb_003001_060 Hb_023732_070 Hb_023732_070 Hb_002893_060--Hb_023732_070 Hb_003878_190 Hb_003878_190 Hb_002893_060--Hb_003878_190 Hb_001824_070 Hb_001824_070 Hb_002893_060--Hb_001824_070 Hb_000703_140--Hb_011794_070 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_009711_030 Hb_009711_030 Hb_000703_140--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_000703_140--Hb_000376_050 Hb_000703_140--Hb_000883_050 Hb_001818_020 Hb_001818_020 Hb_000970_010--Hb_001818_020 Hb_008173_090 Hb_008173_090 Hb_000970_010--Hb_008173_090 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_001584_070 Hb_001584_070 Hb_000970_010--Hb_001584_070 Hb_000545_150 Hb_000545_150 Hb_000970_010--Hb_000545_150 Hb_001754_150 Hb_001754_150 Hb_002477_240--Hb_001754_150 Hb_042202_010 Hb_042202_010 Hb_002477_240--Hb_042202_010 Hb_004738_080 Hb_004738_080 Hb_002477_240--Hb_004738_080 Hb_002477_240--Hb_000260_050 Hb_002477_240--Hb_000703_140 Hb_009767_120 Hb_009767_120 Hb_002477_240--Hb_009767_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
226.253 36.3612 64.6507 39.3704 170.889 173.336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
204.269 406.555 168.326 71.3057 36.4098

CAGE analysis