Hb_001754_150

Information

Type -
Description -
Location Contig1754: 111163-114946
Sequence    

Annotation

kegg
ID rcu:RCOM_0680840
description Vesicle-associated membrane protein, putative
nr
ID XP_012083923.1
description PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
swissprot
ID O23429
description Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2
trembl
ID B9RT39
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_0680840 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated membrane protein 724

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16804: 111124-114897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_150 0.0 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
2 Hb_002477_240 0.0618949944 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
3 Hb_001019_090 0.0677875326 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
4 Hb_001804_040 0.0740798885 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000260_050 0.0758608155 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
6 Hb_042202_010 0.079360817 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
7 Hb_000392_270 0.0827928273 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
8 Hb_000483_160 0.0836952234 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
9 Hb_004204_030 0.0843311844 - - unknown [Populus trichocarpa]
10 Hb_000260_080 0.0861073384 - - thioredoxin H-type 1 [Hevea brasiliensis]
11 Hb_001951_110 0.0874036623 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
12 Hb_024650_050 0.0886945704 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
13 Hb_000200_210 0.0901227599 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006569_020 0.0910253493 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
15 Hb_000316_110 0.0922522378 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
16 Hb_004297_100 0.0922601505 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
17 Hb_007992_030 0.0948176687 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
18 Hb_000417_110 0.0950729267 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
19 Hb_168918_020 0.0961120024 - - pectin acetylesterase, putative [Ricinus communis]
20 Hb_000977_130 0.0972795428 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]

Gene co-expression network

sample Hb_001754_150 Hb_001754_150 Hb_002477_240 Hb_002477_240 Hb_001754_150--Hb_002477_240 Hb_001019_090 Hb_001019_090 Hb_001754_150--Hb_001019_090 Hb_001804_040 Hb_001804_040 Hb_001754_150--Hb_001804_040 Hb_000260_050 Hb_000260_050 Hb_001754_150--Hb_000260_050 Hb_042202_010 Hb_042202_010 Hb_001754_150--Hb_042202_010 Hb_000392_270 Hb_000392_270 Hb_001754_150--Hb_000392_270 Hb_002477_240--Hb_042202_010 Hb_004738_080 Hb_004738_080 Hb_002477_240--Hb_004738_080 Hb_002477_240--Hb_000260_050 Hb_000703_140 Hb_000703_140 Hb_002477_240--Hb_000703_140 Hb_009767_120 Hb_009767_120 Hb_002477_240--Hb_009767_120 Hb_004297_100 Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_007166_050 Hb_007166_050 Hb_001019_090--Hb_007166_050 Hb_000617_320 Hb_000617_320 Hb_001019_090--Hb_000617_320 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160 Hb_001951_110 Hb_001951_110 Hb_001804_040--Hb_001951_110 Hb_004204_030 Hb_004204_030 Hb_001804_040--Hb_004204_030 Hb_000866_300 Hb_000866_300 Hb_001804_040--Hb_000866_300 Hb_001804_040--Hb_001019_090 Hb_001366_230 Hb_001366_230 Hb_001804_040--Hb_001366_230 Hb_007747_090 Hb_007747_090 Hb_000260_050--Hb_007747_090 Hb_000260_050--Hb_000483_160 Hb_004899_220 Hb_004899_220 Hb_000260_050--Hb_004899_220 Hb_000977_080 Hb_000977_080 Hb_000260_050--Hb_000977_080 Hb_001214_030 Hb_001214_030 Hb_042202_010--Hb_001214_030 Hb_000417_110 Hb_000417_110 Hb_042202_010--Hb_000417_110 Hb_000684_090 Hb_000684_090 Hb_042202_010--Hb_000684_090 Hb_000025_530 Hb_000025_530 Hb_042202_010--Hb_000025_530 Hb_000392_270--Hb_000977_080 Hb_001369_650 Hb_001369_650 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.553 15.7561 24.3176 16.8633 85.2913 99.9027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.871 136.787 62.7447 13.5005 11.4064

CAGE analysis